Hb_099116_010

Information

Type -
Description -
Location Contig99116: 1017-3869
Sequence    

Annotation

kegg
ID rcu:RCOM_0923270
description hypothetical protein
nr
ID XP_002515482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RP13
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0923270 PE=4 SV=1
Gene Ontology
ID GO:0016020
description uncharacterized vacuolar membrane protein yml018c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64780: 370-2819
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099116_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007456_020 0.1186074558 - - unknown [Lotus japonicus]
3 Hb_000168_010 0.125718045 - - PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X1 [Populus euphratica]
4 Hb_004881_030 0.1330785684 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
5 Hb_003780_020 0.1396176069 - - PREDICTED: prolyl 4-hydroxylase subunit alpha-1 isoform X2 [Glycine max]
6 Hb_000004_020 0.1454384457 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000586_030 0.1466377485 - - hypothetical protein OsJ_17572 [Oryza sativa Japonica Group]
8 Hb_002477_050 0.1470246488 - - unnamed protein product [Coffea canephora]
9 Hb_004466_060 0.1498803754 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
10 Hb_102591_010 0.1515289538 - - hypothetical protein JCGZ_09876 [Jatropha curcas]
11 Hb_012678_010 0.1517568709 - - PREDICTED: outer envelope protein 61-like [Gossypium raimondii]
12 Hb_001104_130 0.1533492087 - - C-14 sterol reductase, putative [Ricinus communis]
13 Hb_002603_050 0.1570862367 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
14 Hb_005170_010 0.158066294 - - -
15 Hb_143629_130 0.1580904248 - - unnamed protein product [Coffea canephora]
16 Hb_004303_040 0.1584832208 - - PREDICTED: fumarate hydratase 1, mitochondrial [Jatropha curcas]
17 Hb_050034_010 0.1591536103 - - PREDICTED: cullin-1 [Jatropha curcas]
18 Hb_000107_110 0.1605410083 - - nucleic acid binding protein, putative [Ricinus communis]
19 Hb_002562_110 0.1621822042 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
20 Hb_004040_030 0.1627935275 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_099116_010 Hb_099116_010 Hb_007456_020 Hb_007456_020 Hb_099116_010--Hb_007456_020 Hb_000168_010 Hb_000168_010 Hb_099116_010--Hb_000168_010 Hb_004881_030 Hb_004881_030 Hb_099116_010--Hb_004881_030 Hb_003780_020 Hb_003780_020 Hb_099116_010--Hb_003780_020 Hb_000004_020 Hb_000004_020 Hb_099116_010--Hb_000004_020 Hb_000586_030 Hb_000586_030 Hb_099116_010--Hb_000586_030 Hb_050034_010 Hb_050034_010 Hb_007456_020--Hb_050034_010 Hb_102591_010 Hb_102591_010 Hb_007456_020--Hb_102591_010 Hb_169656_010 Hb_169656_010 Hb_007456_020--Hb_169656_010 Hb_007456_020--Hb_003780_020 Hb_007456_020--Hb_000168_010 Hb_000215_310 Hb_000215_310 Hb_000168_010--Hb_000215_310 Hb_004040_030 Hb_004040_030 Hb_000168_010--Hb_004040_030 Hb_004466_060 Hb_004466_060 Hb_000168_010--Hb_004466_060 Hb_000168_010--Hb_000586_030 Hb_002611_020 Hb_002611_020 Hb_000168_010--Hb_002611_020 Hb_001104_130 Hb_001104_130 Hb_004881_030--Hb_001104_130 Hb_000107_110 Hb_000107_110 Hb_004881_030--Hb_000107_110 Hb_002603_050 Hb_002603_050 Hb_004881_030--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_004881_030--Hb_003052_180 Hb_033152_070 Hb_033152_070 Hb_004881_030--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_004881_030--Hb_000928_190 Hb_012678_010 Hb_012678_010 Hb_003780_020--Hb_012678_010 Hb_012678_020 Hb_012678_020 Hb_003780_020--Hb_012678_020 Hb_007558_100 Hb_007558_100 Hb_003780_020--Hb_007558_100 Hb_002150_040 Hb_002150_040 Hb_003780_020--Hb_002150_040 Hb_005218_020 Hb_005218_020 Hb_003780_020--Hb_005218_020 Hb_003780_020--Hb_004881_030 Hb_012340_070 Hb_012340_070 Hb_000004_020--Hb_012340_070 Hb_002226_080 Hb_002226_080 Hb_000004_020--Hb_002226_080 Hb_001662_100 Hb_001662_100 Hb_000004_020--Hb_001662_100 Hb_000056_130 Hb_000056_130 Hb_000004_020--Hb_000056_130 Hb_009569_040 Hb_009569_040 Hb_000004_020--Hb_009569_040 Hb_004157_100 Hb_004157_100 Hb_000004_020--Hb_004157_100 Hb_003606_060 Hb_003606_060 Hb_000586_030--Hb_003606_060 Hb_038564_010 Hb_038564_010 Hb_000586_030--Hb_038564_010 Hb_000586_030--Hb_003780_020 Hb_000586_030--Hb_012678_010 Hb_001894_070 Hb_001894_070 Hb_000586_030--Hb_001894_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.49089 1.28071 3.41864 21.6241 3.73526 12.7061
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.20994 4.90362 2.29499 9.47862 10.1215

CAGE analysis