Hb_099136_010

Information

Type -
Description -
Location Contig99136: 2027-3022
Sequence    

Annotation

kegg
ID csv:101232135
description cysteine synthase-like
nr
ID XP_011659946.1
description PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
swissprot
ID Q43725
description Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3
trembl
ID A0A0A0LZ77
description Cysteine synthase OS=Cucumis sativus GN=Csa_1G574790 PE=3 SV=1
Gene Ontology
ID GO:0004124
description cysteine synthase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64789: 1808-2304
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099136_010 0.0 - - PREDICTED: cysteine synthase-like isoform X3 [Cucumis sativus]
2 Hb_000159_130 0.1287132809 - - RNA binding protein, putative [Ricinus communis]
3 Hb_008103_050 0.1305947354 - - hypothetical protein JCGZ_07422 [Jatropha curcas]
4 Hb_055619_010 0.130807052 - - PREDICTED: uncharacterized protein LOC105632456 isoform X2 [Jatropha curcas]
5 Hb_001799_200 0.1312553523 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
6 Hb_001242_140 0.1347273881 - - mitochondrial carrier protein, putative [Ricinus communis]
7 Hb_007534_050 0.1352139794 - - PREDICTED: glutamyl-tRNA reductase-binding protein, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_001946_390 0.138123491 - - PREDICTED: NADH-cytochrome b5 reductase-like protein [Jatropha curcas]
9 Hb_001019_150 0.1401861376 - - Acyl-protein thioesterase, putative [Ricinus communis]
10 Hb_000107_150 0.1417312029 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
11 Hb_027459_020 0.1419311916 - - phosphoglycerate mutase, putative [Ricinus communis]
12 Hb_000483_300 0.1422180963 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 4, chloroplastic [Populus euphratica]
13 Hb_001578_020 0.1440565692 - - Protein virR, putative [Ricinus communis]
14 Hb_000187_040 0.1442166794 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
15 Hb_002811_010 0.1467954491 - - cysteine synthase, putative [Ricinus communis]
16 Hb_001006_020 0.1470404337 - - PREDICTED: WW domain-binding protein 4 [Jatropha curcas]
17 Hb_003106_100 0.1475438748 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
18 Hb_002392_010 0.1480925157 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
19 Hb_066842_010 0.1493183261 - - PREDICTED: probable 6-phosphogluconolactonase 4, chloroplastic [Jatropha curcas]
20 Hb_121729_010 0.1495834409 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_099136_010 Hb_099136_010 Hb_000159_130 Hb_000159_130 Hb_099136_010--Hb_000159_130 Hb_008103_050 Hb_008103_050 Hb_099136_010--Hb_008103_050 Hb_055619_010 Hb_055619_010 Hb_099136_010--Hb_055619_010 Hb_001799_200 Hb_001799_200 Hb_099136_010--Hb_001799_200 Hb_001242_140 Hb_001242_140 Hb_099136_010--Hb_001242_140 Hb_007534_050 Hb_007534_050 Hb_099136_010--Hb_007534_050 Hb_001006_020 Hb_001006_020 Hb_000159_130--Hb_001006_020 Hb_001728_060 Hb_001728_060 Hb_000159_130--Hb_001728_060 Hb_000289_110 Hb_000289_110 Hb_000159_130--Hb_000289_110 Hb_027459_020 Hb_027459_020 Hb_000159_130--Hb_027459_020 Hb_000107_150 Hb_000107_150 Hb_000159_130--Hb_000107_150 Hb_003020_260 Hb_003020_260 Hb_000159_130--Hb_003020_260 Hb_000994_120 Hb_000994_120 Hb_008103_050--Hb_000994_120 Hb_000483_300 Hb_000483_300 Hb_008103_050--Hb_000483_300 Hb_001512_010 Hb_001512_010 Hb_008103_050--Hb_001512_010 Hb_004157_050 Hb_004157_050 Hb_008103_050--Hb_004157_050 Hb_004044_040 Hb_004044_040 Hb_008103_050--Hb_004044_040 Hb_066842_010 Hb_066842_010 Hb_008103_050--Hb_066842_010 Hb_002811_010 Hb_002811_010 Hb_055619_010--Hb_002811_010 Hb_005731_160 Hb_005731_160 Hb_055619_010--Hb_005731_160 Hb_055619_010--Hb_007534_050 Hb_001578_020 Hb_001578_020 Hb_055619_010--Hb_001578_020 Hb_004440_060 Hb_004440_060 Hb_055619_010--Hb_004440_060 Hb_004644_030 Hb_004644_030 Hb_055619_010--Hb_004644_030 Hb_006153_030 Hb_006153_030 Hb_001799_200--Hb_006153_030 Hb_000735_110 Hb_000735_110 Hb_001799_200--Hb_000735_110 Hb_002518_210 Hb_002518_210 Hb_001799_200--Hb_002518_210 Hb_002200_040 Hb_002200_040 Hb_001799_200--Hb_002200_040 Hb_004303_040 Hb_004303_040 Hb_001799_200--Hb_004303_040 Hb_005307_050 Hb_005307_050 Hb_001242_140--Hb_005307_050 Hb_002613_020 Hb_002613_020 Hb_001242_140--Hb_002613_020 Hb_001019_150 Hb_001019_150 Hb_001242_140--Hb_001019_150 Hb_003106_100 Hb_003106_100 Hb_001242_140--Hb_003106_100 Hb_016734_070 Hb_016734_070 Hb_001242_140--Hb_016734_070 Hb_186982_040 Hb_186982_040 Hb_001242_140--Hb_186982_040 Hb_007534_050--Hb_004440_060 Hb_005127_030 Hb_005127_030 Hb_007534_050--Hb_005127_030 Hb_007534_050--Hb_001578_020 Hb_007534_050--Hb_002811_010 Hb_000317_260 Hb_000317_260 Hb_007534_050--Hb_000317_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.5579 1.31843 10.8443 13.8947 3.21359 11.1056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.8771 14.2052 7.85999 13.8466 17.5246

CAGE analysis