Hb_099263_010

Information

Type -
Description -
Location Contig99263: 6416-6993
Sequence    

Annotation

kegg
ID cit:102613465
description probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like
nr
ID KFK23837.1
description hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
swissprot
ID -
description -
trembl
ID A0A087G1T5
description Uncharacterized protein OS=Arabis alpina GN=AALP_AAs50029U000400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099263_010 0.0 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
2 Hb_005991_030 0.0364784985 - - copper ion binding protein, putative [Ricinus communis]
3 Hb_011108_010 0.0452465505 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103335582 [Prunus mume]
4 Hb_000007_290 0.0517042426 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
5 Hb_002010_040 0.0542790737 - - -
6 Hb_045260_010 0.0573507678 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
7 Hb_002960_180 0.0588618778 - - PREDICTED: GDSL esterase/lipase EXL3-like [Jatropha curcas]
8 Hb_005228_050 0.0611448327 - - PREDICTED: uncharacterized protein LOC104896168 [Beta vulgaris subsp. vulgaris]
9 Hb_034299_010 0.0615019624 - - F-box and wd40 domain protein, putative [Ricinus communis]
10 Hb_003647_070 0.0670156912 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
11 Hb_000724_040 0.0683145915 transcription factor TF Family: MIKC PREDICTED: MADS-box protein CMB1-like [Jatropha curcas]
12 Hb_002042_220 0.0702745388 - - Kinesin heavy chain, putative [Ricinus communis]
13 Hb_000540_080 0.07176452 - - PREDICTED: laccase-17 [Jatropha curcas]
14 Hb_135887_010 0.0725378649 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
15 Hb_000363_070 0.0780783454 - - conserved hypothetical protein [Ricinus communis]
16 Hb_094074_010 0.0788341178 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
17 Hb_005474_070 0.0818988669 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
18 Hb_003786_030 0.0839321374 - - BnaUnng00830D [Brassica napus]
19 Hb_002250_040 0.0843624422 - - PREDICTED: transcription repressor OFP17 [Jatropha curcas]
20 Hb_002675_220 0.0922368327 - - PREDICTED: probable pyridoxal biosynthesis protein PDX1.2 [Populus euphratica]

Gene co-expression network

sample Hb_099263_010 Hb_099263_010 Hb_005991_030 Hb_005991_030 Hb_099263_010--Hb_005991_030 Hb_011108_010 Hb_011108_010 Hb_099263_010--Hb_011108_010 Hb_000007_290 Hb_000007_290 Hb_099263_010--Hb_000007_290 Hb_002010_040 Hb_002010_040 Hb_099263_010--Hb_002010_040 Hb_045260_010 Hb_045260_010 Hb_099263_010--Hb_045260_010 Hb_002960_180 Hb_002960_180 Hb_099263_010--Hb_002960_180 Hb_005991_030--Hb_011108_010 Hb_135887_010 Hb_135887_010 Hb_005991_030--Hb_135887_010 Hb_005228_050 Hb_005228_050 Hb_005991_030--Hb_005228_050 Hb_005991_030--Hb_002960_180 Hb_000724_040 Hb_000724_040 Hb_005991_030--Hb_000724_040 Hb_011108_010--Hb_135887_010 Hb_011108_010--Hb_005228_050 Hb_011108_010--Hb_000724_040 Hb_003786_030 Hb_003786_030 Hb_011108_010--Hb_003786_030 Hb_000007_290--Hb_002010_040 Hb_003647_070 Hb_003647_070 Hb_000007_290--Hb_003647_070 Hb_005474_070 Hb_005474_070 Hb_000007_290--Hb_005474_070 Hb_002042_220 Hb_002042_220 Hb_000007_290--Hb_002042_220 Hb_000007_290--Hb_045260_010 Hb_002010_040--Hb_003647_070 Hb_002010_040--Hb_005474_070 Hb_002010_040--Hb_002042_220 Hb_002010_040--Hb_045260_010 Hb_000363_070 Hb_000363_070 Hb_045260_010--Hb_000363_070 Hb_045260_010--Hb_003647_070 Hb_000540_080 Hb_000540_080 Hb_045260_010--Hb_000540_080 Hb_094074_010 Hb_094074_010 Hb_002960_180--Hb_094074_010 Hb_002929_040 Hb_002929_040 Hb_002960_180--Hb_002929_040 Hb_034299_010 Hb_034299_010 Hb_002960_180--Hb_034299_010 Hb_002960_180--Hb_002042_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.181977 0.821737 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.10979

CAGE analysis