Hb_099878_040

Information

Type -
Description -
Location Contig99878: 69910-72521
Sequence    

Annotation

kegg
ID obr:102703670
description uncharacterized LOC102703670
nr
ID XP_006651526.1
description PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
swissprot
ID -
description -
trembl
ID B9RY72
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0810760 PE=4 SV=1
Gene Ontology
ID GO:0003676
description retrotransposon unclassified

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_64907: 72695-72926
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099878_040 0.0 - - PREDICTED: uncharacterized protein LOC102703670 [Oryza brachyantha]
2 Hb_000975_060 0.0249080189 - - -
3 Hb_000248_020 0.0381924072 - - PREDICTED: uncharacterized protein LOC104243878 [Nicotiana sylvestris]
4 Hb_094694_010 0.0507927611 - - -
5 Hb_159124_010 0.0727853595 - - PREDICTED: uncharacterized protein LOC103332224 [Prunus mume]
6 Hb_047923_030 0.0802510879 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
7 Hb_134377_070 0.0879925324 - - -
8 Hb_000142_090 0.09084335 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
9 Hb_181013_010 0.0928589901 - - PREDICTED: uncharacterized protein LOC105629028 [Jatropha curcas]
10 Hb_005432_020 0.0957086151 - - -
11 Hb_039547_010 0.0983424416 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
12 Hb_101034_010 0.098718012 - - -
13 Hb_000916_010 0.0992512242 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
14 Hb_002576_010 0.1008670658 - - -
15 Hb_006120_160 0.1026048507 - - -
16 Hb_000209_010 0.1226783939 - - -
17 Hb_179183_010 0.1255021589 - - RALF-LIKE 32 family protein [Populus trichocarpa]
18 Hb_017640_010 0.1301435981 - - hypothetical protein JCGZ_18815 [Jatropha curcas]
19 Hb_151411_010 0.1352913593 - - -
20 Hb_001174_050 0.1403098658 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_099878_040 Hb_099878_040 Hb_000975_060 Hb_000975_060 Hb_099878_040--Hb_000975_060 Hb_000248_020 Hb_000248_020 Hb_099878_040--Hb_000248_020 Hb_094694_010 Hb_094694_010 Hb_099878_040--Hb_094694_010 Hb_159124_010 Hb_159124_010 Hb_099878_040--Hb_159124_010 Hb_047923_030 Hb_047923_030 Hb_099878_040--Hb_047923_030 Hb_134377_070 Hb_134377_070 Hb_099878_040--Hb_134377_070 Hb_000975_060--Hb_000248_020 Hb_000975_060--Hb_094694_010 Hb_000975_060--Hb_159124_010 Hb_039547_010 Hb_039547_010 Hb_000975_060--Hb_039547_010 Hb_000916_010 Hb_000916_010 Hb_000975_060--Hb_000916_010 Hb_000248_020--Hb_094694_010 Hb_000248_020--Hb_039547_010 Hb_000248_020--Hb_000916_010 Hb_000248_020--Hb_159124_010 Hb_094694_010--Hb_039547_010 Hb_094694_010--Hb_000916_010 Hb_000209_010 Hb_000209_010 Hb_094694_010--Hb_000209_010 Hb_181013_010 Hb_181013_010 Hb_159124_010--Hb_181013_010 Hb_005432_020 Hb_005432_020 Hb_159124_010--Hb_005432_020 Hb_000142_090 Hb_000142_090 Hb_159124_010--Hb_000142_090 Hb_101034_010 Hb_101034_010 Hb_159124_010--Hb_101034_010 Hb_159124_010--Hb_134377_070 Hb_006120_160 Hb_006120_160 Hb_159124_010--Hb_006120_160 Hb_002576_010 Hb_002576_010 Hb_047923_030--Hb_002576_010 Hb_047923_030--Hb_134377_070 Hb_047923_030--Hb_000142_090 Hb_047923_030--Hb_181013_010 Hb_047923_030--Hb_159124_010 Hb_047923_030--Hb_005432_020 Hb_134377_070--Hb_000142_090 Hb_134377_070--Hb_181013_010 Hb_134377_070--Hb_005432_020 Hb_134377_070--Hb_101034_010 Hb_134377_070--Hb_006120_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.115024 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0441644 0.402657

CAGE analysis