Hb_099990_030

Information

Type -
Description -
Location Contig99990: 16498-18393
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID AAO37645.1
description NBS-LRR resistance protein RGH1 [Manihot esculenta]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID Q84XG0
description NBS-LRR resistance protein RGH1 OS=Manihot esculenta PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099990_030 0.0 - - NBS-LRR resistance protein RGH1 [Manihot esculenta]
2 Hb_000787_010 0.1726726235 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
3 Hb_004968_010 0.2150224231 - - PREDICTED: receptor-like protein 12 isoform X1 [Populus euphratica]
4 Hb_004524_070 0.2195837685 - - PREDICTED: uncharacterized protein LOC105634656 [Jatropha curcas]
5 Hb_167508_010 0.2237005055 - - hypothetical protein POPTR_0001s27330g [Populus trichocarpa]
6 Hb_061466_020 0.2525908064 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_161023_010 0.2618470123 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
8 Hb_003292_060 0.2632334935 - - PREDICTED: transcription factor HBP-1b(c38) [Jatropha curcas]
9 Hb_113823_010 0.2701522029 - - -
10 Hb_003768_060 0.2701592028 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
11 Hb_002234_230 0.2715433357 - - hypothetical protein JCGZ_26141 [Jatropha curcas]
12 Hb_000589_370 0.2748295381 transcription factor TF Family: LOB PREDICTED: LOB domain-containing protein 33 [Jatropha curcas]
13 Hb_000347_090 0.2839961132 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic-like [Vitis vinifera]
14 Hb_000663_030 0.2843301222 - - -
15 Hb_001214_170 0.2892603741 - - pyruvate kinase family protein [Medicago truncatula]
16 Hb_011903_010 0.2900470469 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002235_180 0.2903917575 transcription factor TF Family: ERF PREDICTED: uncharacterized protein LOC105133481 [Populus euphratica]
18 Hb_015928_020 0.3001653208 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
19 Hb_001124_030 0.3082908064 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
20 Hb_014919_020 0.314739038 - - -

Gene co-expression network

sample Hb_099990_030 Hb_099990_030 Hb_000787_010 Hb_000787_010 Hb_099990_030--Hb_000787_010 Hb_004968_010 Hb_004968_010 Hb_099990_030--Hb_004968_010 Hb_004524_070 Hb_004524_070 Hb_099990_030--Hb_004524_070 Hb_167508_010 Hb_167508_010 Hb_099990_030--Hb_167508_010 Hb_061466_020 Hb_061466_020 Hb_099990_030--Hb_061466_020 Hb_161023_010 Hb_161023_010 Hb_099990_030--Hb_161023_010 Hb_004021_090 Hb_004021_090 Hb_000787_010--Hb_004021_090 Hb_003768_060 Hb_003768_060 Hb_000787_010--Hb_003768_060 Hb_028639_040 Hb_028639_040 Hb_000787_010--Hb_028639_040 Hb_000589_370 Hb_000589_370 Hb_000787_010--Hb_000589_370 Hb_002235_180 Hb_002235_180 Hb_000787_010--Hb_002235_180 Hb_004968_010--Hb_002235_180 Hb_001124_030 Hb_001124_030 Hb_004968_010--Hb_001124_030 Hb_004968_010--Hb_000787_010 Hb_003292_060 Hb_003292_060 Hb_004968_010--Hb_003292_060 Hb_000663_030 Hb_000663_030 Hb_004968_010--Hb_000663_030 Hb_004524_070--Hb_000589_370 Hb_113823_010 Hb_113823_010 Hb_004524_070--Hb_113823_010 Hb_004524_070--Hb_167508_010 Hb_002234_230 Hb_002234_230 Hb_004524_070--Hb_002234_230 Hb_004524_070--Hb_003292_060 Hb_167508_010--Hb_061466_020 Hb_000003_140 Hb_000003_140 Hb_167508_010--Hb_000003_140 Hb_001214_170 Hb_001214_170 Hb_167508_010--Hb_001214_170 Hb_129459_010 Hb_129459_010 Hb_167508_010--Hb_129459_010 Hb_000189_430 Hb_000189_430 Hb_167508_010--Hb_000189_430 Hb_015928_020 Hb_015928_020 Hb_061466_020--Hb_015928_020 Hb_000997_010 Hb_000997_010 Hb_061466_020--Hb_000997_010 Hb_014361_050 Hb_014361_050 Hb_061466_020--Hb_014361_050 Hb_061466_020--Hb_129459_010 Hb_005517_010 Hb_005517_010 Hb_061466_020--Hb_005517_010 Hb_188411_010 Hb_188411_010 Hb_161023_010--Hb_188411_010 Hb_160233_020 Hb_160233_020 Hb_161023_010--Hb_160233_020 Hb_161023_010--Hb_001214_170 Hb_014919_020 Hb_014919_020 Hb_161023_010--Hb_014919_020 Hb_161023_010--Hb_061466_020 Hb_161023_010--Hb_167508_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.12055 0.0805104 0.0956636 0.0211917 0.0226032 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis