Hb_100105_010

Information

Type -
Description -
Location Contig100105: 1108-1619
Sequence    

Annotation

kegg
ID tcc:TCM_043259
description Ras-related small GTP-binding family protein isoform 1
nr
ID XP_012080957.1
description PREDICTED: ras-related protein RABF1 [Jatropha curcas]
swissprot
ID Q9CB01
description Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1 SV=1
trembl
ID A0A067KF37
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16153 PE=3 SV=1
Gene Ontology
ID GO:0005769
description ras-related protein rabf1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100105_010 0.0 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
2 Hb_000302_130 0.1548585384 - - PREDICTED: trafficking protein particle complex subunit 1 [Jatropha curcas]
3 Hb_008667_040 0.1767857322 - - glycerol-3-phosphate transporter family protein [Populus trichocarpa]
4 Hb_000264_290 0.1835711326 - - PREDICTED: DNA-directed RNA polymerase II subunit RPB2 [Jatropha curcas]
5 Hb_000152_230 0.1882477378 - - PREDICTED: uncharacterized protein LOC105648566 [Jatropha curcas]
6 Hb_188996_010 0.1920966385 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003902_060 0.1945126104 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
8 Hb_076038_010 0.1967799307 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001545_050 0.2028852507 - - PREDICTED: ras-related protein Rab7 [Nicotiana sylvestris]
10 Hb_089140_120 0.2062706578 - - PREDICTED: MOB kinase activator-like 1 [Jatropha curcas]
11 Hb_002151_090 0.2068143784 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 1-like isoform X2 [Jatropha curcas]
12 Hb_078568_010 0.2096828281 - - hypothetical protein PRUPE_ppa013245mg [Prunus persica]
13 Hb_000175_090 0.2105808418 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000258_320 0.2112494987 - - -
15 Hb_188209_010 0.2127031034 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X2 [Jatropha curcas]
16 Hb_007778_020 0.2174503716 - - -
17 Hb_141532_010 0.2176472025 - - PREDICTED: protein SMG9-like [Jatropha curcas]
18 Hb_000731_230 0.2183885417 - - PREDICTED: abnormal spindle-like microcephaly-associated protein homolog [Jatropha curcas]
19 Hb_006907_100 0.2204128356 - - PREDICTED: tropinone reductase-like 3 [Jatropha curcas]
20 Hb_012120_030 0.221173398 - - -

Gene co-expression network

sample Hb_100105_010 Hb_100105_010 Hb_000302_130 Hb_000302_130 Hb_100105_010--Hb_000302_130 Hb_008667_040 Hb_008667_040 Hb_100105_010--Hb_008667_040 Hb_000264_290 Hb_000264_290 Hb_100105_010--Hb_000264_290 Hb_000152_230 Hb_000152_230 Hb_100105_010--Hb_000152_230 Hb_188996_010 Hb_188996_010 Hb_100105_010--Hb_188996_010 Hb_003902_060 Hb_003902_060 Hb_100105_010--Hb_003902_060 Hb_000302_130--Hb_000264_290 Hb_006907_100 Hb_006907_100 Hb_000302_130--Hb_006907_100 Hb_000743_030 Hb_000743_030 Hb_000302_130--Hb_000743_030 Hb_000122_050 Hb_000122_050 Hb_000302_130--Hb_000122_050 Hb_012120_030 Hb_012120_030 Hb_000302_130--Hb_012120_030 Hb_002045_140 Hb_002045_140 Hb_008667_040--Hb_002045_140 Hb_008667_040--Hb_000264_290 Hb_133311_010 Hb_133311_010 Hb_008667_040--Hb_133311_010 Hb_010068_100 Hb_010068_100 Hb_008667_040--Hb_010068_100 Hb_007123_060 Hb_007123_060 Hb_008667_040--Hb_007123_060 Hb_000264_290--Hb_007123_060 Hb_000264_290--Hb_012120_030 Hb_188209_010 Hb_188209_010 Hb_000264_290--Hb_188209_010 Hb_149714_010 Hb_149714_010 Hb_000264_290--Hb_149714_010 Hb_007123_070 Hb_007123_070 Hb_000152_230--Hb_007123_070 Hb_001898_240 Hb_001898_240 Hb_000152_230--Hb_001898_240 Hb_006261_090 Hb_006261_090 Hb_000152_230--Hb_006261_090 Hb_000313_300 Hb_000313_300 Hb_000152_230--Hb_000313_300 Hb_000261_110 Hb_000261_110 Hb_000152_230--Hb_000261_110 Hb_000529_210 Hb_000529_210 Hb_000152_230--Hb_000529_210 Hb_000169_190 Hb_000169_190 Hb_188996_010--Hb_000169_190 Hb_188996_010--Hb_007123_070 Hb_000453_040 Hb_000453_040 Hb_188996_010--Hb_000453_040 Hb_003994_140 Hb_003994_140 Hb_188996_010--Hb_003994_140 Hb_010053_040 Hb_010053_040 Hb_188996_010--Hb_010053_040 Hb_003891_070 Hb_003891_070 Hb_188996_010--Hb_003891_070 Hb_078568_010 Hb_078568_010 Hb_003902_060--Hb_078568_010 Hb_000731_230 Hb_000731_230 Hb_003902_060--Hb_000731_230 Hb_075230_010 Hb_075230_010 Hb_003902_060--Hb_075230_010 Hb_000099_090 Hb_000099_090 Hb_003902_060--Hb_000099_090 Hb_000045_280 Hb_000045_280 Hb_003902_060--Hb_000045_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
391.27 264.901 307.835 282.469 143.41 209.925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
190.958 262.637 10.7851 10.0181 0

CAGE analysis