Hb_100180_010

Information

Type -
Description -
Location Contig100180: 2177-2761
Sequence    

Annotation

kegg
ID rcu:RCOM_0024480
description Disease resistance protein RPM1, putative
nr
ID XP_012085868.1
description PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
swissprot
ID Q9FJK8
description Probable disease resistance RPP8-like protein 4 OS=Arabidopsis thaliana GN=RPP8L4 PE=2 SV=1
trembl
ID B9SPJ1
description Disease resistance protein RPM1, putative OS=Ricinus communis GN=RCOM_0024480 PE=4 SV=1
Gene Ontology
ID GO:0016787
description disease resistance protein rpm1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100180_010 0.0 - - PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
2 Hb_004429_110 0.1438601078 - - PREDICTED: protein SPIRAL1-like 1 [Populus euphratica]
3 Hb_004567_020 0.1506022605 - - Small ubiquitin-related modifier 2 [Morus notabilis]
4 Hb_001307_210 0.1569158812 - - Os02g0814700 [Oryza sativa Japonica Group]
5 Hb_007218_100 0.1592573992 - - phosphofructokinase [Hevea brasiliensis]
6 Hb_000302_290 0.1632656226 - - 40S ribosomal S10-3 -like protein [Gossypium arboreum]
7 Hb_002260_160 0.1659771817 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004545_130 0.1696343425 - - uncharacterized protein LOC100305465 [Glycine max]
9 Hb_003784_050 0.1753945759 - - PREDICTED: replication protein A 32 kDa subunit B [Jatropha curcas]
10 Hb_006588_080 0.1755278642 - - hypothetical protein JCGZ_25746 [Jatropha curcas]
11 Hb_000110_170 0.1756078322 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_028271_020 0.1771396398 - - acyl-CoA oxidase, putative [Ricinus communis]
13 Hb_003376_290 0.1780483322 - - hypothetical protein POPTR_0010s22880g [Populus trichocarpa]
14 Hb_004735_050 0.1782269059 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
15 Hb_000617_110 0.178511986 - - translationally controlled tumor protein [Hevea brasiliensis]
16 Hb_000431_160 0.1786565324 - - PREDICTED: protein transport protein Sec61 subunit gamma-like [Jatropha curcas]
17 Hb_007254_080 0.1789135916 - - -
18 Hb_000878_020 0.1795877299 - - PREDICTED: uncharacterized protein LOC105629937 [Jatropha curcas]
19 Hb_147752_010 0.18106529 - - PREDICTED: 40S ribosomal protein S9-2-like isoform X1 [Populus euphratica]
20 Hb_000635_080 0.1818816261 - - 60S ribosomal protein L17A [Hevea brasiliensis]

Gene co-expression network

sample Hb_100180_010 Hb_100180_010 Hb_004429_110 Hb_004429_110 Hb_100180_010--Hb_004429_110 Hb_004567_020 Hb_004567_020 Hb_100180_010--Hb_004567_020 Hb_001307_210 Hb_001307_210 Hb_100180_010--Hb_001307_210 Hb_007218_100 Hb_007218_100 Hb_100180_010--Hb_007218_100 Hb_000302_290 Hb_000302_290 Hb_100180_010--Hb_000302_290 Hb_002260_160 Hb_002260_160 Hb_100180_010--Hb_002260_160 Hb_000454_180 Hb_000454_180 Hb_004429_110--Hb_000454_180 Hb_004735_050 Hb_004735_050 Hb_004429_110--Hb_004735_050 Hb_006588_080 Hb_006588_080 Hb_004429_110--Hb_006588_080 Hb_000617_110 Hb_000617_110 Hb_004429_110--Hb_000617_110 Hb_001105_090 Hb_001105_090 Hb_004429_110--Hb_001105_090 Hb_000635_080 Hb_000635_080 Hb_004429_110--Hb_000635_080 Hb_120823_010 Hb_120823_010 Hb_004567_020--Hb_120823_010 Hb_004545_130 Hb_004545_130 Hb_004567_020--Hb_004545_130 Hb_000878_020 Hb_000878_020 Hb_004567_020--Hb_000878_020 Hb_000110_170 Hb_000110_170 Hb_004567_020--Hb_000110_170 Hb_147752_010 Hb_147752_010 Hb_004567_020--Hb_147752_010 Hb_007254_080 Hb_007254_080 Hb_004567_020--Hb_007254_080 Hb_001449_090 Hb_001449_090 Hb_001307_210--Hb_001449_090 Hb_011377_020 Hb_011377_020 Hb_001307_210--Hb_011377_020 Hb_103118_020 Hb_103118_020 Hb_001307_210--Hb_103118_020 Hb_003020_330 Hb_003020_330 Hb_001307_210--Hb_003020_330 Hb_001307_210--Hb_006588_080 Hb_012395_130 Hb_012395_130 Hb_001307_210--Hb_012395_130 Hb_000152_100 Hb_000152_100 Hb_007218_100--Hb_000152_100 Hb_010827_020 Hb_010827_020 Hb_007218_100--Hb_010827_020 Hb_007218_100--Hb_002260_160 Hb_021888_120 Hb_021888_120 Hb_007218_100--Hb_021888_120 Hb_001579_140 Hb_001579_140 Hb_007218_100--Hb_001579_140 Hb_001240_020 Hb_001240_020 Hb_000302_290--Hb_001240_020 Hb_005000_180 Hb_005000_180 Hb_000302_290--Hb_005000_180 Hb_062135_020 Hb_062135_020 Hb_000302_290--Hb_062135_020 Hb_000061_130 Hb_000061_130 Hb_000302_290--Hb_000061_130 Hb_000302_290--Hb_147752_010 Hb_002518_290 Hb_002518_290 Hb_000302_290--Hb_002518_290 Hb_002260_160--Hb_004429_110 Hb_004907_020 Hb_004907_020 Hb_002260_160--Hb_004907_020 Hb_002260_160--Hb_021888_120 Hb_001140_240 Hb_001140_240 Hb_002260_160--Hb_001140_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.42556 10.8576 3.99945 8.62098 1.65944 5.12147
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.0967 102.035 21.2525 24.5429 8.57732

CAGE analysis