Hb_100451_010

Information

Type -
Description -
Location Contig100451: 10426-11429
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100451_010 0.0 - - -
2 Hb_027472_200 0.0330672856 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
3 Hb_003938_040 0.0448183286 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098-like [Jatropha curcas]
4 Hb_007108_060 0.0784521932 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_006995_030 0.1730461184 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
6 Hb_003226_270 0.1966696302 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
7 Hb_130470_010 0.1971119545 - - hypothetical protein, partial [Pseudomonas tolaasii]
8 Hb_163434_010 0.2061846166 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
9 Hb_002400_430 0.2077040043 - - -
10 Hb_108331_010 0.2087031998 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
11 Hb_005183_180 0.2114196438 - - alpha amylase family protein [Populus trichocarpa]
12 Hb_085438_010 0.213717033 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
13 Hb_002431_070 0.2138078019 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
14 Hb_004730_030 0.2140698531 - - synaptonemal complex protein, putative [Ricinus communis]
15 Hb_000676_210 0.2170524617 - - Cytochrome P450 superfamily protein [Theobroma cacao]
16 Hb_003207_140 0.2173403957 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
17 Hb_004337_010 0.2201740932 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_002223_010 0.220188626 - - hypothetical protein VITISV_009489 [Vitis vinifera]
19 Hb_029793_020 0.2205934451 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_029154_020 0.2207143341 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_100451_010 Hb_100451_010 Hb_027472_200 Hb_027472_200 Hb_100451_010--Hb_027472_200 Hb_003938_040 Hb_003938_040 Hb_100451_010--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_100451_010--Hb_007108_060 Hb_006995_030 Hb_006995_030 Hb_100451_010--Hb_006995_030 Hb_003226_270 Hb_003226_270 Hb_100451_010--Hb_003226_270 Hb_130470_010 Hb_130470_010 Hb_100451_010--Hb_130470_010 Hb_027472_200--Hb_003938_040 Hb_027472_200--Hb_007108_060 Hb_027472_200--Hb_006995_030 Hb_005183_180 Hb_005183_180 Hb_027472_200--Hb_005183_180 Hb_002400_430 Hb_002400_430 Hb_027472_200--Hb_002400_430 Hb_003938_040--Hb_007108_060 Hb_003938_040--Hb_006995_030 Hb_003938_040--Hb_003226_270 Hb_003938_040--Hb_130470_010 Hb_007108_060--Hb_006995_030 Hb_007108_060--Hb_003226_270 Hb_007108_060--Hb_130470_010 Hb_006995_030--Hb_003226_270 Hb_006995_030--Hb_130470_010 Hb_163434_010 Hb_163434_010 Hb_006995_030--Hb_163434_010 Hb_108331_010 Hb_108331_010 Hb_006995_030--Hb_108331_010 Hb_085438_010 Hb_085438_010 Hb_006995_030--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_006995_030--Hb_002431_070 Hb_003226_270--Hb_130470_010 Hb_003226_270--Hb_163434_010 Hb_003226_270--Hb_108331_010 Hb_003226_270--Hb_085438_010 Hb_003226_270--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_003226_270--Hb_004730_030 Hb_130470_010--Hb_163434_010 Hb_130470_010--Hb_108331_010 Hb_130470_010--Hb_085438_010 Hb_130470_010--Hb_002431_070 Hb_130470_010--Hb_004730_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.715239 0 0 0.527801

CAGE analysis