Hb_100526_020

Information

Type -
Description -
Location Contig100526: 4132-11058
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09340g
description POPTRDRAFT_757197; hypothetical protein
nr
ID XP_002304348.2
description hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
swissprot
ID Q9LXA5
description L-type lectin-domain containing receptor kinase IX.1 OS=Arabidopsis thaliana GN=LECRK91 PE=2 SV=1
trembl
ID B9GZH8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s09340g PE=3 SV=2
Gene Ontology
ID GO:0004672
description concanavalin a-like lectin protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100526_020 0.0 - - hypothetical protein POPTR_0003s09340g [Populus trichocarpa]
2 Hb_000096_050 0.0841166289 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000974_030 0.0888614925 - - PREDICTED: uncharacterized protein LOC105128463 isoform X1 [Populus euphratica]
4 Hb_000930_020 0.123456937 - - hypothetical protein PRUPE_ppa026493mg [Prunus persica]
5 Hb_000805_220 0.1389000241 - - polyprotein [Citrus endogenous pararetrovirus]
6 Hb_001379_080 0.1553067373 - - PREDICTED: WAT1-related protein At5g07050-like [Vitis vinifera]
7 Hb_000984_110 0.1563297864 - - hypothetical protein JCGZ_15953 [Jatropha curcas]
8 Hb_009403_010 0.1584124146 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
9 Hb_004730_010 0.160508999 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT5 [Jatropha curcas]
10 Hb_003145_030 0.1610466086 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005048_090 0.1634139611 - - PREDICTED: glycine-rich cell wall structural protein 2 [Jatropha curcas]
12 Hb_007103_020 0.1643878693 - - hypothetical protein POPTR_0007s04191g [Populus trichocarpa]
13 Hb_002060_070 0.1695681 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
14 Hb_006501_140 0.17082294 - - PREDICTED: MATE efflux family protein 9-like [Jatropha curcas]
15 Hb_156850_050 0.1749511434 - - PREDICTED: uncharacterized protein LOC105635250 [Jatropha curcas]
16 Hb_004102_200 0.175723895 - - PREDICTED: putative UDP-rhamnose:rhamnosyltransferase 1 [Jatropha curcas]
17 Hb_000041_160 0.1762620086 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
18 Hb_030949_010 0.1783918364 - - hypothetical protein POPTR_0001s24140g [Populus trichocarpa]
19 Hb_002785_010 0.1786468568 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
20 Hb_032202_010 0.1791723694 - - PREDICTED: subtilisin-like protease SBT1.1 [Jatropha curcas]

Gene co-expression network

sample Hb_100526_020 Hb_100526_020 Hb_000096_050 Hb_000096_050 Hb_100526_020--Hb_000096_050 Hb_000974_030 Hb_000974_030 Hb_100526_020--Hb_000974_030 Hb_000930_020 Hb_000930_020 Hb_100526_020--Hb_000930_020 Hb_000805_220 Hb_000805_220 Hb_100526_020--Hb_000805_220 Hb_001379_080 Hb_001379_080 Hb_100526_020--Hb_001379_080 Hb_000984_110 Hb_000984_110 Hb_100526_020--Hb_000984_110 Hb_000096_050--Hb_000930_020 Hb_000096_050--Hb_000974_030 Hb_156850_050 Hb_156850_050 Hb_000096_050--Hb_156850_050 Hb_002060_070 Hb_002060_070 Hb_000096_050--Hb_002060_070 Hb_000752_040 Hb_000752_040 Hb_000096_050--Hb_000752_040 Hb_003145_030 Hb_003145_030 Hb_000974_030--Hb_003145_030 Hb_005048_090 Hb_005048_090 Hb_000974_030--Hb_005048_090 Hb_000181_390 Hb_000181_390 Hb_000974_030--Hb_000181_390 Hb_009403_010 Hb_009403_010 Hb_000974_030--Hb_009403_010 Hb_000930_020--Hb_000805_220 Hb_000930_020--Hb_002060_070 Hb_009492_020 Hb_009492_020 Hb_000930_020--Hb_009492_020 Hb_000930_020--Hb_000974_030 Hb_006501_140 Hb_006501_140 Hb_000805_220--Hb_006501_140 Hb_000805_220--Hb_009492_020 Hb_000805_220--Hb_002060_070 Hb_000805_220--Hb_000096_050 Hb_001379_080--Hb_002060_070 Hb_082972_010 Hb_082972_010 Hb_001379_080--Hb_082972_010 Hb_001379_080--Hb_000805_220 Hb_002837_080 Hb_002837_080 Hb_001379_080--Hb_002837_080 Hb_001379_080--Hb_000930_020 Hb_000984_110--Hb_005048_090 Hb_061783_010 Hb_061783_010 Hb_000984_110--Hb_061783_010 Hb_000230_550 Hb_000230_550 Hb_000984_110--Hb_000230_550 Hb_001295_050 Hb_001295_050 Hb_000984_110--Hb_001295_050 Hb_000172_070 Hb_000172_070 Hb_000984_110--Hb_000172_070 Hb_004102_200 Hb_004102_200 Hb_000984_110--Hb_004102_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.348257 0.0283517 0.327597 0 0.00580933
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.286745

CAGE analysis