Hb_100684_010

Information

Type -
Description -
Location Contig100684: 21-1118
Sequence    

Annotation

kegg
ID pda:103700139
description uncharacterized LOC103700139
nr
ID WP_042941327.1
description hypothetical protein, partial [Pseudomonas fluorescens]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100684_010 0.0 - - hypothetical protein, partial [Pseudomonas fluorescens]
2 Hb_001878_030 0.1908332954 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105126050 [Populus euphratica]
3 Hb_002536_020 0.2108274177 - - PREDICTED: uncharacterized protein LOC105801112 [Gossypium raimondii]
4 Hb_007749_030 0.2114852858 - - -
5 Hb_003155_060 0.2555118505 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
6 Hb_000576_100 0.2556758108 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_108768_010 0.2577810908 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
8 Hb_008305_010 0.2702013552 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_017687_010 0.2737303015 - - retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa Japonica Group]
10 Hb_115572_040 0.2759446217 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
11 Hb_004520_030 0.2883693998 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_003739_040 0.2938583543 - - RNA-directed DNA polymerase (Reverse transcriptase); Chromo; Zinc finger, CCHC-type; Peptidase aspartic, active site; Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula]
13 Hb_001158_010 0.29699121 - - hypothetical protein, partial [Pseudomonas fluorescens]
14 Hb_003567_020 0.3005200301 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003487_010 0.303123684 - - -
16 Hb_033066_030 0.3035419661 - - hypothetical protein PRUPE_ppa016115mg [Prunus persica]
17 Hb_002060_040 0.3036699433 - - putative polyprotein [Oryza sativa Japonica Group]
18 Hb_031866_030 0.3062097696 - - PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo]
19 Hb_000009_010 0.3123102894 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
20 Hb_006111_040 0.3127598798 - - PREDICTED: uncharacterized protein LOC103485923 [Cucumis melo]

Gene co-expression network

sample Hb_100684_010 Hb_100684_010 Hb_001878_030 Hb_001878_030 Hb_100684_010--Hb_001878_030 Hb_002536_020 Hb_002536_020 Hb_100684_010--Hb_002536_020 Hb_007749_030 Hb_007749_030 Hb_100684_010--Hb_007749_030 Hb_003155_060 Hb_003155_060 Hb_100684_010--Hb_003155_060 Hb_000576_100 Hb_000576_100 Hb_100684_010--Hb_000576_100 Hb_108768_010 Hb_108768_010 Hb_100684_010--Hb_108768_010 Hb_001322_090 Hb_001322_090 Hb_001878_030--Hb_001322_090 Hb_001629_040 Hb_001629_040 Hb_001878_030--Hb_001629_040 Hb_128193_010 Hb_128193_010 Hb_001878_030--Hb_128193_010 Hb_017687_010 Hb_017687_010 Hb_001878_030--Hb_017687_010 Hb_000009_010 Hb_000009_010 Hb_001878_030--Hb_000009_010 Hb_002536_020--Hb_007749_030 Hb_002536_020--Hb_003155_060 Hb_002536_020--Hb_000576_100 Hb_002536_020--Hb_108768_010 Hb_003607_100 Hb_003607_100 Hb_002536_020--Hb_003607_100 Hb_115572_040 Hb_115572_040 Hb_002536_020--Hb_115572_040 Hb_007749_030--Hb_003155_060 Hb_007749_030--Hb_000576_100 Hb_007749_030--Hb_108768_010 Hb_003487_010 Hb_003487_010 Hb_007749_030--Hb_003487_010 Hb_007749_030--Hb_003607_100 Hb_003155_060--Hb_000576_100 Hb_003155_060--Hb_108768_010 Hb_003155_060--Hb_003487_010 Hb_003155_060--Hb_017687_010 Hb_000576_100--Hb_108768_010 Hb_000576_100--Hb_003487_010 Hb_000576_100--Hb_017687_010 Hb_108768_010--Hb_017687_010 Hb_108768_010--Hb_003487_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0221533 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0507393 0 0 0.0481456 0.244898

CAGE analysis