Hb_100777_010

Information

Type -
Description -
Location Contig100777: 338-4207
Sequence    

Annotation

kegg
ID vvi:100251197
description mediator of RNA polymerase II transcription subunit 19a-like
nr
ID XP_011043848.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
swissprot
ID Q9FMP0
description Mediator of RNA polymerase II transcription subunit 19a OS=Arabidopsis thaliana GN=MED19A PE=1 SV=1
trembl
ID A0A067LLG0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15059 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100777_010 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populus euphratica]
2 Hb_000087_020 0.0858027464 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
3 Hb_001235_070 0.0900480396 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000362_210 0.0908267547 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
5 Hb_000333_090 0.0912332155 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
6 Hb_001369_050 0.0914786551 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
7 Hb_002259_150 0.0937428459 - - BnaC04g40780D [Brassica napus]
8 Hb_000172_030 0.0958115744 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
9 Hb_000751_130 0.0958692878 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
10 Hb_001754_010 0.0977531126 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_084849_020 0.0993709138 - - ARF GTPase activator, putative [Ricinus communis]
12 Hb_005398_030 0.0993756799 - - PREDICTED: 3-hydroxyisobutyryl-CoA hydrolase 1-like [Jatropha curcas]
13 Hb_001718_100 0.101839363 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
14 Hb_000676_290 0.1018459912 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
15 Hb_005686_110 0.1025503806 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
16 Hb_001173_040 0.1026698382 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
17 Hb_071130_030 0.1028814321 - - PREDICTED: dnaJ homolog subfamily C member 17 [Jatropha curcas]
18 Hb_025193_050 0.1031828608 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
19 Hb_007594_090 0.1048163547 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
20 Hb_010172_030 0.1057275035 - - hypothetical protein JCGZ_04668 [Jatropha curcas]

Gene co-expression network

sample Hb_100777_010 Hb_100777_010 Hb_000087_020 Hb_000087_020 Hb_100777_010--Hb_000087_020 Hb_001235_070 Hb_001235_070 Hb_100777_010--Hb_001235_070 Hb_000362_210 Hb_000362_210 Hb_100777_010--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_100777_010--Hb_000333_090 Hb_001369_050 Hb_001369_050 Hb_100777_010--Hb_001369_050 Hb_002259_150 Hb_002259_150 Hb_100777_010--Hb_002259_150 Hb_000024_080 Hb_000024_080 Hb_000087_020--Hb_000024_080 Hb_000444_050 Hb_000444_050 Hb_000087_020--Hb_000444_050 Hb_005398_030 Hb_005398_030 Hb_000087_020--Hb_005398_030 Hb_004032_100 Hb_004032_100 Hb_000087_020--Hb_004032_100 Hb_005997_010 Hb_005997_010 Hb_000087_020--Hb_005997_010 Hb_000751_130 Hb_000751_130 Hb_000087_020--Hb_000751_130 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_148209_120 Hb_148209_120 Hb_001235_070--Hb_148209_120 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_002660_160 Hb_002660_160 Hb_000362_210--Hb_002660_160 Hb_007021_020 Hb_007021_020 Hb_000362_210--Hb_007021_020 Hb_084849_020 Hb_084849_020 Hb_000362_210--Hb_084849_020 Hb_010172_030 Hb_010172_030 Hb_000362_210--Hb_010172_030 Hb_000479_180 Hb_000479_180 Hb_000362_210--Hb_000479_180 Hb_000634_050 Hb_000634_050 Hb_000362_210--Hb_000634_050 Hb_000333_090--Hb_084849_020 Hb_000333_090--Hb_010172_030 Hb_000333_090--Hb_001369_050 Hb_000333_090--Hb_000362_210 Hb_002214_050 Hb_002214_050 Hb_000333_090--Hb_002214_050 Hb_001369_050--Hb_084849_020 Hb_001369_050--Hb_005686_110 Hb_001718_100 Hb_001718_100 Hb_001369_050--Hb_001718_100 Hb_092100_020 Hb_092100_020 Hb_001369_050--Hb_092100_020 Hb_003050_230 Hb_003050_230 Hb_001369_050--Hb_003050_230 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_002272_260 Hb_002272_260 Hb_002259_150--Hb_002272_260 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_004453_150 Hb_004453_150 Hb_002259_150--Hb_004453_150 Hb_000193_350 Hb_000193_350 Hb_002259_150--Hb_000193_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.98335 1.41403 1.67822 2.99749 4.51766 15.7132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3187 15.9473 10.2345 4.09432 2.77217

CAGE analysis