Hb_100786_010

Information

Type -
Description -
Location Contig100786: 25-2384
Sequence    

Annotation

kegg
ID rcu:RCOM_1508190
description hypothetical protein
nr
ID KJB51122.1
description hypothetical protein B456_008G202600 [Gossypium raimondii]
swissprot
ID Q0WWT7
description Rhodanese-like domain-containing protein 11, chloroplastic OS=Arabidopsis thaliana GN=STR11 PE=2 SV=1
trembl
ID A0A0D2PYF7
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G202600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100786_010 0.0 - - hypothetical protein B456_008G202600 [Gossypium raimondii]
2 Hb_000589_280 0.0264679284 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
3 Hb_018709_010 0.0447662484 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
4 Hb_010839_040 0.0472633629 - - hypothetical protein JCGZ_20868 [Jatropha curcas]
5 Hb_020141_020 0.0485382644 - - -
6 Hb_000462_100 0.0493759583 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
7 Hb_002835_030 0.0559270347 - - PREDICTED: lysM domain receptor-like kinase 4 [Vitis vinifera]
8 Hb_028013_010 0.0606682541 - - alcohol dehydrogenase, putative [Ricinus communis]
9 Hb_002758_020 0.0615709451 - - PREDICTED: putative auxin efflux carrier component 5 [Jatropha curcas]
10 Hb_000563_080 0.0647066964 - - -
11 Hb_005464_040 0.0683388835 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_000025_250 0.069488955 - - PREDICTED: flavonoid 3',5'-hydroxylase 2-like [Jatropha curcas]
13 Hb_032717_030 0.075881334 - - PREDICTED: CASP-like protein 1B2 [Jatropha curcas]
14 Hb_001301_020 0.0780991999 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
15 Hb_003188_020 0.0783298873 - - chitinase, putative [Ricinus communis]
16 Hb_000419_080 0.0793677171 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
17 Hb_000828_030 0.0803720162 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
18 Hb_020025_020 0.0807787079 - - SENESCENCE-RELATED GENE 1 family protein [Populus trichocarpa]
19 Hb_166232_010 0.081533147 - - hypothetical protein JCGZ_22831 [Jatropha curcas]
20 Hb_010358_010 0.0823607369 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]

Gene co-expression network

sample Hb_100786_010 Hb_100786_010 Hb_000589_280 Hb_000589_280 Hb_100786_010--Hb_000589_280 Hb_018709_010 Hb_018709_010 Hb_100786_010--Hb_018709_010 Hb_010839_040 Hb_010839_040 Hb_100786_010--Hb_010839_040 Hb_020141_020 Hb_020141_020 Hb_100786_010--Hb_020141_020 Hb_000462_100 Hb_000462_100 Hb_100786_010--Hb_000462_100 Hb_002835_030 Hb_002835_030 Hb_100786_010--Hb_002835_030 Hb_000589_280--Hb_010839_040 Hb_000589_280--Hb_000462_100 Hb_000589_280--Hb_002835_030 Hb_002758_020 Hb_002758_020 Hb_000589_280--Hb_002758_020 Hb_005464_040 Hb_005464_040 Hb_000589_280--Hb_005464_040 Hb_028013_010 Hb_028013_010 Hb_018709_010--Hb_028013_010 Hb_018709_010--Hb_020141_020 Hb_000025_250 Hb_000025_250 Hb_018709_010--Hb_000025_250 Hb_001032_060 Hb_001032_060 Hb_018709_010--Hb_001032_060 Hb_000419_080 Hb_000419_080 Hb_018709_010--Hb_000419_080 Hb_010839_040--Hb_000462_100 Hb_010839_040--Hb_002835_030 Hb_010839_040--Hb_002758_020 Hb_166232_010 Hb_166232_010 Hb_010839_040--Hb_166232_010 Hb_000563_080 Hb_000563_080 Hb_020141_020--Hb_000563_080 Hb_003188_020 Hb_003188_020 Hb_020141_020--Hb_003188_020 Hb_010358_010 Hb_010358_010 Hb_020141_020--Hb_010358_010 Hb_153208_010 Hb_153208_010 Hb_020141_020--Hb_153208_010 Hb_014034_020 Hb_014034_020 Hb_020141_020--Hb_014034_020 Hb_000462_100--Hb_002835_030 Hb_000462_100--Hb_002758_020 Hb_000462_100--Hb_005464_040 Hb_002835_030--Hb_002758_020 Hb_002835_030--Hb_166232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0611441 0 0.0181888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.22816 0

CAGE analysis