Hb_100873_030

Information

Type -
Description -
Location Contig100873: 30202-34403
Sequence    

Annotation

kegg
ID atr:s00876p00007370
description AMTR_s00876p00007370; hypothetical protein
nr
ID XP_012480788.1
description PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100873_030 0.0 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
2 Hb_000995_070 0.1282718519 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
3 Hb_000141_240 0.1501598137 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
4 Hb_042223_010 0.1547433089 - - Protein Z, putative [Ricinus communis]
5 Hb_018954_010 0.1615930309 - - -
6 Hb_156473_010 0.1687875253 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
7 Hb_000009_070 0.1977131832 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
8 Hb_001114_340 0.2006687213 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
9 Hb_000784_040 0.2140021138 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
10 Hb_088538_020 0.216630986 - - hypothetical protein JCGZ_12178 [Jatropha curcas]
11 Hb_000172_570 0.2168818943 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
12 Hb_010417_010 0.2200374827 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
13 Hb_001534_170 0.2204437373 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
14 Hb_008790_050 0.2239147444 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002073_120 0.2313514854 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
16 Hb_000227_200 0.2456959904 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
17 Hb_000972_010 0.2560205662 - - PREDICTED: kinesin KP1 [Jatropha curcas]
18 Hb_001587_210 0.2595143794 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
19 Hb_064885_080 0.2607471463 - - -
20 Hb_003786_090 0.2624359753 - - hypothetical protein JCGZ_19199 [Jatropha curcas]

Gene co-expression network

sample Hb_100873_030 Hb_100873_030 Hb_000995_070 Hb_000995_070 Hb_100873_030--Hb_000995_070 Hb_000141_240 Hb_000141_240 Hb_100873_030--Hb_000141_240 Hb_042223_010 Hb_042223_010 Hb_100873_030--Hb_042223_010 Hb_018954_010 Hb_018954_010 Hb_100873_030--Hb_018954_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_000009_070 Hb_000009_070 Hb_100873_030--Hb_000009_070 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000784_040 Hb_000784_040 Hb_000995_070--Hb_000784_040 Hb_002073_120 Hb_002073_120 Hb_000995_070--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_000995_070--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_000995_070--Hb_010417_010 Hb_000141_240--Hb_018954_010 Hb_000141_240--Hb_000172_570 Hb_000141_240--Hb_002073_120 Hb_000141_240--Hb_000009_070 Hb_000141_240--Hb_000995_070 Hb_042223_010--Hb_156473_010 Hb_000042_240 Hb_000042_240 Hb_042223_010--Hb_000042_240 Hb_000227_200 Hb_000227_200 Hb_042223_010--Hb_000227_200 Hb_001587_210 Hb_001587_210 Hb_042223_010--Hb_001587_210 Hb_042223_010--Hb_000784_040 Hb_000972_010 Hb_000972_010 Hb_018954_010--Hb_000972_010 Hb_001534_170 Hb_001534_170 Hb_018954_010--Hb_001534_170 Hb_017124_020 Hb_017124_020 Hb_018954_010--Hb_017124_020 Hb_018954_010--Hb_000995_070 Hb_001391_140 Hb_001391_140 Hb_156473_010--Hb_001391_140 Hb_156473_010--Hb_000042_240 Hb_156473_010--Hb_000784_040 Hb_156473_010--Hb_001587_210 Hb_000009_070--Hb_010417_010 Hb_000083_040 Hb_000083_040 Hb_000009_070--Hb_000083_040 Hb_000009_070--Hb_002073_120 Hb_154340_010 Hb_154340_010 Hb_000009_070--Hb_154340_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0186454 0 0 0 0 0.0163934
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0852195 0.100549 0.746589 0.0268737 0

CAGE analysis