Hb_100886_010

Information

Type -
Description -
Location Contig100886: 456-1397
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061DPQ5
description Uncharacterized protein OS=Theobroma cacao GN=TCM_003164 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_100886_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000465_070 0.0936988572 - - PREDICTED: 3-isopropylmalate dehydratase small subunit 3-like [Jatropha curcas]
3 Hb_000035_480 0.1115563544 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
4 Hb_140627_010 0.119106594 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000072_200 0.120884522 - - PREDICTED: myb-like protein X [Jatropha curcas]
6 Hb_003020_260 0.1233330609 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
7 Hb_000457_290 0.1240518543 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
8 Hb_000130_220 0.1294348987 - - PREDICTED: uncharacterized protein At3g15000, mitochondrial-like [Jatropha curcas]
9 Hb_020025_010 0.1294662089 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
10 Hb_002232_060 0.1308352108 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
11 Hb_012627_040 0.1337091135 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
12 Hb_003768_030 0.1364785828 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
13 Hb_002631_180 0.1367612623 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2 [Jatropha curcas]
14 Hb_000649_140 0.1400241747 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase setd3 isoform X1 [Jatropha curcas]
15 Hb_001976_040 0.1404649338 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
16 Hb_002193_030 0.1405206543 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH130-like [Jatropha curcas]
17 Hb_000403_070 0.143130686 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002131_030 0.1431841499 - - PREDICTED: pyruvate kinase isozyme G, chloroplastic [Jatropha curcas]
19 Hb_001910_010 0.1467067136 - - Dual specificity protein phosphatase, putative [Ricinus communis]
20 Hb_002239_050 0.1470319144 - - PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_100886_010 Hb_100886_010 Hb_000465_070 Hb_000465_070 Hb_100886_010--Hb_000465_070 Hb_000035_480 Hb_000035_480 Hb_100886_010--Hb_000035_480 Hb_140627_010 Hb_140627_010 Hb_100886_010--Hb_140627_010 Hb_000072_200 Hb_000072_200 Hb_100886_010--Hb_000072_200 Hb_003020_260 Hb_003020_260 Hb_100886_010--Hb_003020_260 Hb_000457_290 Hb_000457_290 Hb_100886_010--Hb_000457_290 Hb_000465_070--Hb_000035_480 Hb_000465_070--Hb_000457_290 Hb_000403_070 Hb_000403_070 Hb_000465_070--Hb_000403_070 Hb_002232_060 Hb_002232_060 Hb_000465_070--Hb_002232_060 Hb_003106_100 Hb_003106_100 Hb_000465_070--Hb_003106_100 Hb_000035_480--Hb_140627_010 Hb_000035_480--Hb_000457_290 Hb_000035_480--Hb_000403_070 Hb_001892_070 Hb_001892_070 Hb_000035_480--Hb_001892_070 Hb_000392_550 Hb_000392_550 Hb_000035_480--Hb_000392_550 Hb_140627_010--Hb_000403_070 Hb_140627_010--Hb_000457_290 Hb_001240_010 Hb_001240_010 Hb_140627_010--Hb_001240_010 Hb_006846_150 Hb_006846_150 Hb_140627_010--Hb_006846_150 Hb_140627_010--Hb_000392_550 Hb_000072_200--Hb_002232_060 Hb_001979_020 Hb_001979_020 Hb_000072_200--Hb_001979_020 Hb_000072_200--Hb_000465_070 Hb_000107_150 Hb_000107_150 Hb_000072_200--Hb_000107_150 Hb_000072_200--Hb_000035_480 Hb_000072_200--Hb_000457_290 Hb_018272_020 Hb_018272_020 Hb_003020_260--Hb_018272_020 Hb_000289_110 Hb_000289_110 Hb_003020_260--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_003020_260--Hb_002014_030 Hb_003020_260--Hb_000107_150 Hb_001366_180 Hb_001366_180 Hb_003020_260--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_003020_260--Hb_025098_010 Hb_000457_290--Hb_000403_070 Hb_000457_290--Hb_001892_070 Hb_000457_290--Hb_002232_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0774686 0.131454 0.0735283 0.13366 0.044667 0.0806295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.163865 0.343659 0.157489 0.207616 0.34995

CAGE analysis