Hb_101020_010

Information

Type -
Description -
Location Contig101020: 391-839
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00601: 727-903
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101020_010 0.0 - - -
2 Hb_009693_030 0.1494656128 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_001916_060 0.163234383 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
4 Hb_000160_150 0.1712593742 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic [Cucumis melo]
5 Hb_007136_020 0.1784205997 - - PREDICTED: oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic [Populus euphratica]
6 Hb_003297_020 0.179050346 - - unknown [Populus trichocarpa x Populus deltoides]
7 Hb_124961_010 0.1811933302 - - hypothetical protein EUGRSUZ_B03893 [Eucalyptus grandis]
8 Hb_000996_180 0.1876487284 - - PREDICTED: tetraspanin-10 [Jatropha curcas]
9 Hb_006960_030 0.1881849516 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44-like [Jatropha curcas]
10 Hb_002708_020 0.1891189874 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
11 Hb_063409_020 0.1903510427 - - Calcium-binding protein, putative [Ricinus communis]
12 Hb_114984_010 0.1912232542 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000365_160 0.1916152884 - - PREDICTED: serine/threonine-protein kinase At5g01020 [Jatropha curcas]
14 Hb_171619_010 0.1934637581 - - protein binding protein, putative [Ricinus communis]
15 Hb_089889_020 0.1937901446 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein At2g36080-like [Jatropha curcas]
16 Hb_001935_190 0.1990302458 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
17 Hb_170532_010 0.2005808873 - - PREDICTED: COP9 signalosome complex subunit 8 [Jatropha curcas]
18 Hb_004920_060 0.2024137413 - - PREDICTED: vacuolar protein sorting-associated protein 51 homolog [Jatropha curcas]
19 Hb_125861_010 0.2041138728 - - hypothetical protein RCOM_0703970 [Ricinus communis]
20 Hb_070385_010 0.2052044454 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]

Gene co-expression network

sample Hb_101020_010 Hb_101020_010 Hb_009693_030 Hb_009693_030 Hb_101020_010--Hb_009693_030 Hb_001916_060 Hb_001916_060 Hb_101020_010--Hb_001916_060 Hb_000160_150 Hb_000160_150 Hb_101020_010--Hb_000160_150 Hb_007136_020 Hb_007136_020 Hb_101020_010--Hb_007136_020 Hb_003297_020 Hb_003297_020 Hb_101020_010--Hb_003297_020 Hb_124961_010 Hb_124961_010 Hb_101020_010--Hb_124961_010 Hb_000996_180 Hb_000996_180 Hb_009693_030--Hb_000996_180 Hb_003177_010 Hb_003177_010 Hb_009693_030--Hb_003177_010 Hb_089889_020 Hb_089889_020 Hb_009693_030--Hb_089889_020 Hb_001910_020 Hb_001910_020 Hb_009693_030--Hb_001910_020 Hb_107847_010 Hb_107847_010 Hb_009693_030--Hb_107847_010 Hb_073973_160 Hb_073973_160 Hb_009693_030--Hb_073973_160 Hb_114984_010 Hb_114984_010 Hb_001916_060--Hb_114984_010 Hb_001195_150 Hb_001195_150 Hb_001916_060--Hb_001195_150 Hb_128376_010 Hb_128376_010 Hb_001916_060--Hb_128376_010 Hb_005517_010 Hb_005517_010 Hb_001916_060--Hb_005517_010 Hb_001935_190 Hb_001935_190 Hb_001916_060--Hb_001935_190 Hb_002708_020 Hb_002708_020 Hb_000160_150--Hb_002708_020 Hb_171619_010 Hb_171619_010 Hb_000160_150--Hb_171619_010 Hb_027402_090 Hb_027402_090 Hb_000160_150--Hb_027402_090 Hb_008246_030 Hb_008246_030 Hb_000160_150--Hb_008246_030 Hb_170532_010 Hb_170532_010 Hb_000160_150--Hb_170532_010 Hb_002686_330 Hb_002686_330 Hb_000160_150--Hb_002686_330 Hb_007136_020--Hb_124961_010 Hb_007136_020--Hb_003297_020 Hb_007136_020--Hb_170532_010 Hb_006816_340 Hb_006816_340 Hb_007136_020--Hb_006816_340 Hb_070385_010 Hb_070385_010 Hb_007136_020--Hb_070385_010 Hb_003297_020--Hb_070385_010 Hb_002249_110 Hb_002249_110 Hb_003297_020--Hb_002249_110 Hb_003297_020--Hb_124961_010 Hb_001767_120 Hb_001767_120 Hb_003297_020--Hb_001767_120 Hb_124961_010--Hb_170532_010 Hb_124961_010--Hb_171619_010 Hb_004570_050 Hb_004570_050 Hb_124961_010--Hb_004570_050 Hb_124961_010--Hb_000160_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.8183 15.2652 22.3676 15.9741 40.3286 56.517
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25751 4.83168 0.577773 0.893522 1.2657

CAGE analysis