Hb_101040_010

Information

Type -
Description -
Location Contig101040: 1560-2799
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101040_010 0.0 - - -
2 Hb_001676_030 0.1747472551 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_005504_010 0.1925612204 - - hypothetical protein POPTR_1605s00200g [Populus trichocarpa]
4 Hb_000071_200 0.2078630235 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
5 Hb_000317_090 0.2578090216 - - hypothetical protein RCOM_1176360 [Ricinus communis]
6 Hb_138652_020 0.2583634743 - - -
7 Hb_002837_090 0.2589110519 - - PREDICTED: probable receptor-like protein kinase At5g18500 [Jatropha curcas]
8 Hb_012188_010 0.2639050846 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_001217_060 0.2678678032 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
10 Hb_114261_010 0.270101996 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
11 Hb_003772_080 0.2725484955 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
12 Hb_032076_010 0.2767452055 - - -
13 Hb_005671_030 0.2848320039 - - -
14 Hb_007904_190 0.2905503842 - - -
15 Hb_187661_010 0.2942001802 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
16 Hb_005539_300 0.2950936624 - - PREDICTED: deacetoxyvindoline 4-hydroxylase-like [Populus euphratica]
17 Hb_008891_020 0.2963632275 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
18 Hb_056305_010 0.296372779 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_002257_070 0.2964137486 - - hypothetical protein, partial [Pseudomonas fluorescens]
20 Hb_003017_010 0.2965330266 - - PREDICTED: uncharacterized protein LOC104878882 [Vitis vinifera]

Gene co-expression network

sample Hb_101040_010 Hb_101040_010 Hb_001676_030 Hb_001676_030 Hb_101040_010--Hb_001676_030 Hb_005504_010 Hb_005504_010 Hb_101040_010--Hb_005504_010 Hb_000071_200 Hb_000071_200 Hb_101040_010--Hb_000071_200 Hb_000317_090 Hb_000317_090 Hb_101040_010--Hb_000317_090 Hb_138652_020 Hb_138652_020 Hb_101040_010--Hb_138652_020 Hb_002837_090 Hb_002837_090 Hb_101040_010--Hb_002837_090 Hb_005671_030 Hb_005671_030 Hb_001676_030--Hb_005671_030 Hb_001676_030--Hb_000071_200 Hb_187661_010 Hb_187661_010 Hb_001676_030--Hb_187661_010 Hb_008891_020 Hb_008891_020 Hb_001676_030--Hb_008891_020 Hb_056305_010 Hb_056305_010 Hb_001676_030--Hb_056305_010 Hb_032076_010 Hb_032076_010 Hb_005504_010--Hb_032076_010 Hb_005504_010--Hb_000071_200 Hb_005504_010--Hb_001676_030 Hb_012188_010 Hb_012188_010 Hb_005504_010--Hb_012188_010 Hb_063433_010 Hb_063433_010 Hb_005504_010--Hb_063433_010 Hb_001217_060 Hb_001217_060 Hb_000071_200--Hb_001217_060 Hb_000071_200--Hb_012188_010 Hb_000071_200--Hb_032076_010 Hb_005539_300 Hb_005539_300 Hb_000071_200--Hb_005539_300 Hb_000317_090--Hb_002837_090 Hb_001276_010 Hb_001276_010 Hb_000317_090--Hb_001276_010 Hb_003772_080 Hb_003772_080 Hb_000317_090--Hb_003772_080 Hb_171659_010 Hb_171659_010 Hb_000317_090--Hb_171659_010 Hb_022452_010 Hb_022452_010 Hb_000317_090--Hb_022452_010 Hb_003816_020 Hb_003816_020 Hb_000317_090--Hb_003816_020 Hb_057746_010 Hb_057746_010 Hb_138652_020--Hb_057746_010 Hb_037605_010 Hb_037605_010 Hb_138652_020--Hb_037605_010 Hb_012194_010 Hb_012194_010 Hb_138652_020--Hb_012194_010 Hb_006275_030 Hb_006275_030 Hb_138652_020--Hb_006275_030 Hb_000574_020 Hb_000574_020 Hb_138652_020--Hb_000574_020 Hb_002463_080 Hb_002463_080 Hb_138652_020--Hb_002463_080 Hb_032018_010 Hb_032018_010 Hb_002837_090--Hb_032018_010 Hb_000014_130 Hb_000014_130 Hb_002837_090--Hb_000014_130 Hb_002837_090--Hb_001276_010 Hb_000062_500 Hb_000062_500 Hb_002837_090--Hb_000062_500 Hb_007904_190 Hb_007904_190 Hb_002837_090--Hb_007904_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.30877 0.439517 0 0 0.179738 1.67853
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.154558 0

CAGE analysis