Hb_101133_050

Information

Type -
Description -
Location Contig101133: 39370-48353
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08390g
description POPTRDRAFT_714193; hypothetical protein
nr
ID XP_012086424.1
description PREDICTED: condensin complex subunit 3 [Jatropha curcas]
swissprot
ID Q9YHB5
description Condensin complex subunit 3 OS=Xenopus laevis GN=ncapg PE=1 SV=1
trembl
ID B9H3B9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08390g PE=4 SV=2
Gene Ontology
ID GO:0000796
description condensin complex subunit 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00614: 39109-43511 , PASA_asmbl_00615: 43517-43930 , PASA_asmbl_00616: 45197-46165 , PASA_asmbl_00617: 46325-46770 , PASA_asmbl_00618: 47666-48360
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101133_050 0.0 - - PREDICTED: condensin complex subunit 3 [Jatropha curcas]
2 Hb_002311_090 0.0808170744 - - PREDICTED: uncharacterized protein LOC105643503 [Jatropha curcas]
3 Hb_001307_150 0.0854664948 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_007474_020 0.085758225 - - multicopper oxidase, putative [Ricinus communis]
5 Hb_016898_020 0.0880944944 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105120899 [Populus euphratica]
6 Hb_000317_120 0.0886896044 - - PREDICTED: uncharacterized protein LOC105647000 [Jatropha curcas]
7 Hb_005276_090 0.0887292991 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]
8 Hb_000661_150 0.0904551893 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
9 Hb_003106_090 0.0907072792 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
10 Hb_000345_450 0.0914955523 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
11 Hb_080952_060 0.0920563429 - - PREDICTED: patellin-4 [Populus euphratica]
12 Hb_033041_010 0.0931608734 - - PREDICTED: phragmoplast orienting kinesin 2-like [Populus euphratica]
13 Hb_001998_180 0.0937317187 - - actin binding protein, putative [Ricinus communis]
14 Hb_000856_390 0.096009579 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001688_100 0.0960521343 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]
16 Hb_012150_040 0.0971497473 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000085_360 0.1016619468 - - PREDICTED: kinesin-like protein KIN12B [Jatropha curcas]
18 Hb_007632_080 0.1031802316 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
19 Hb_005542_150 0.1038196087 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
20 Hb_000480_060 0.1040369805 - - PREDICTED: kinesin-like protein NACK1 [Jatropha curcas]

Gene co-expression network

sample Hb_101133_050 Hb_101133_050 Hb_002311_090 Hb_002311_090 Hb_101133_050--Hb_002311_090 Hb_001307_150 Hb_001307_150 Hb_101133_050--Hb_001307_150 Hb_007474_020 Hb_007474_020 Hb_101133_050--Hb_007474_020 Hb_016898_020 Hb_016898_020 Hb_101133_050--Hb_016898_020 Hb_000317_120 Hb_000317_120 Hb_101133_050--Hb_000317_120 Hb_005276_090 Hb_005276_090 Hb_101133_050--Hb_005276_090 Hb_000567_290 Hb_000567_290 Hb_002311_090--Hb_000567_290 Hb_007632_210 Hb_007632_210 Hb_002311_090--Hb_007632_210 Hb_012150_040 Hb_012150_040 Hb_002311_090--Hb_012150_040 Hb_124677_050 Hb_124677_050 Hb_002311_090--Hb_124677_050 Hb_000661_150 Hb_000661_150 Hb_002311_090--Hb_000661_150 Hb_000856_390 Hb_000856_390 Hb_001307_150--Hb_000856_390 Hb_000480_060 Hb_000480_060 Hb_001307_150--Hb_000480_060 Hb_001307_150--Hb_016898_020 Hb_001699_270 Hb_001699_270 Hb_001307_150--Hb_001699_270 Hb_003847_060 Hb_003847_060 Hb_001307_150--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001307_150--Hb_000345_450 Hb_001390_040 Hb_001390_040 Hb_007474_020--Hb_001390_040 Hb_007474_020--Hb_000856_390 Hb_007474_020--Hb_001307_150 Hb_007474_020--Hb_000317_120 Hb_118282_020 Hb_118282_020 Hb_007474_020--Hb_118282_020 Hb_016898_020--Hb_000856_390 Hb_009113_060 Hb_009113_060 Hb_016898_020--Hb_009113_060 Hb_016898_020--Hb_000480_060 Hb_000116_050 Hb_000116_050 Hb_016898_020--Hb_000116_050 Hb_016898_020--Hb_000317_120 Hb_001950_090 Hb_001950_090 Hb_000317_120--Hb_001950_090 Hb_000317_120--Hb_000856_390 Hb_000317_120--Hb_012150_040 Hb_000576_140 Hb_000576_140 Hb_000317_120--Hb_000576_140 Hb_003106_090 Hb_003106_090 Hb_000317_120--Hb_003106_090 Hb_000085_360 Hb_000085_360 Hb_005276_090--Hb_000085_360 Hb_005276_090--Hb_000480_060 Hb_005276_090--Hb_003106_090 Hb_119044_040 Hb_119044_040 Hb_005276_090--Hb_119044_040 Hb_002374_090 Hb_002374_090 Hb_005276_090--Hb_002374_090 Hb_003776_050 Hb_003776_050 Hb_005276_090--Hb_003776_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0561181 0.349106 10.5797 5.95654 0.0401123 0.0571768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.117904 0.103093 0.0987551 1.00534 0.881307

CAGE analysis