Hb_101334_020

Information

Type -
Description -
Location Contig101334: 3700-15043
Sequence    

Annotation

kegg
ID tcc:TCM_020134
description Transducin/WD40 repeat-like superfamily protein isoform 1
nr
ID XP_012072585.1
description PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
swissprot
ID Q9Y7K5
description Uncharacterized WD repeat-containing protein C2A9.03 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2A9.03 PE=3 SV=2
trembl
ID A0A067KNT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05773 PE=4 SV=1
Gene Ontology
ID GO:0005515
description uncharacterized wd repeat-containing

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00675: 3778-15016
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101334_020 0.0 - - PREDICTED: uncharacterized WD repeat-containing protein C2A9.03-like [Jatropha curcas]
2 Hb_000230_530 0.0657176418 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001390_100 0.0691468057 - - PREDICTED: LL-diaminopimelate aminotransferase, chloroplastic [Jatropha curcas]
4 Hb_003529_040 0.0922116697 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
5 Hb_001009_140 0.09402375 - - hypothetical protein JCGZ_11337 [Jatropha curcas]
6 Hb_017193_010 0.0956076754 - - PREDICTED: lactation elevated protein 1 isoform X1 [Jatropha curcas]
7 Hb_009296_020 0.0993401638 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
8 Hb_000116_250 0.0993978842 - - PREDICTED: DNA mismatch repair protein MLH3 [Jatropha curcas]
9 Hb_070624_010 0.1018778884 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
10 Hb_000496_130 0.1018941515 - - PREDICTED: fructokinase-1 [Jatropha curcas]
11 Hb_002627_040 0.1061082027 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
12 Hb_000620_020 0.1069560873 - - PREDICTED: uncharacterized protein LOC105649917 [Jatropha curcas]
13 Hb_000926_060 0.107278761 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000331_570 0.1102410986 - - PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Jatropha curcas]
15 Hb_000510_190 0.111209024 - - glutathione reductase [Hevea brasiliensis]
16 Hb_000300_560 0.1114155011 - - PREDICTED: probable glycosyltransferase At5g03795 isoform X1 [Jatropha curcas]
17 Hb_003680_220 0.1124868471 - - hypothetical protein B456_002G243700 [Gossypium raimondii]
18 Hb_002010_090 0.1133718201 - - PREDICTED: aminomethyltransferase, mitochondrial [Jatropha curcas]
19 Hb_001143_100 0.1149443895 - - PREDICTED: delta-aminolevulinic acid dehydratase, chloroplastic [Populus euphratica]
20 Hb_000500_220 0.1156556469 - - PREDICTED: intersectin-1 [Jatropha curcas]

Gene co-expression network

sample Hb_101334_020 Hb_101334_020 Hb_000230_530 Hb_000230_530 Hb_101334_020--Hb_000230_530 Hb_001390_100 Hb_001390_100 Hb_101334_020--Hb_001390_100 Hb_003529_040 Hb_003529_040 Hb_101334_020--Hb_003529_040 Hb_001009_140 Hb_001009_140 Hb_101334_020--Hb_001009_140 Hb_017193_010 Hb_017193_010 Hb_101334_020--Hb_017193_010 Hb_009296_020 Hb_009296_020 Hb_101334_020--Hb_009296_020 Hb_000230_530--Hb_009296_020 Hb_002010_090 Hb_002010_090 Hb_000230_530--Hb_002010_090 Hb_000594_060 Hb_000594_060 Hb_000230_530--Hb_000594_060 Hb_000510_190 Hb_000510_190 Hb_000230_530--Hb_000510_190 Hb_000496_130 Hb_000496_130 Hb_000230_530--Hb_000496_130 Hb_000116_250 Hb_000116_250 Hb_001390_100--Hb_000116_250 Hb_025194_090 Hb_025194_090 Hb_001390_100--Hb_025194_090 Hb_000094_100 Hb_000094_100 Hb_001390_100--Hb_000094_100 Hb_001390_100--Hb_000496_130 Hb_138585_030 Hb_138585_030 Hb_001390_100--Hb_138585_030 Hb_003529_040--Hb_000230_530 Hb_002627_040 Hb_002627_040 Hb_003529_040--Hb_002627_040 Hb_003529_040--Hb_001390_100 Hb_000331_570 Hb_000331_570 Hb_003529_040--Hb_000331_570 Hb_003529_040--Hb_017193_010 Hb_005665_090 Hb_005665_090 Hb_001009_140--Hb_005665_090 Hb_000589_170 Hb_000589_170 Hb_001009_140--Hb_000589_170 Hb_000029_400 Hb_000029_400 Hb_001009_140--Hb_000029_400 Hb_006588_190 Hb_006588_190 Hb_001009_140--Hb_006588_190 Hb_001009_140--Hb_000116_250 Hb_002871_040 Hb_002871_040 Hb_017193_010--Hb_002871_040 Hb_172979_010 Hb_172979_010 Hb_017193_010--Hb_172979_010 Hb_001623_500 Hb_001623_500 Hb_017193_010--Hb_001623_500 Hb_003835_110 Hb_003835_110 Hb_017193_010--Hb_003835_110 Hb_000579_080 Hb_000579_080 Hb_017193_010--Hb_000579_080 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_002687_200 Hb_002687_200 Hb_009296_020--Hb_002687_200 Hb_001677_100 Hb_001677_100 Hb_009296_020--Hb_001677_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.4939 8.43806 29.2295 11.7393 3.94318 3.64935
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45573 5.57357 4.73728 15.36 21.6279

CAGE analysis