Hb_101376_010

Information

Type -
Description -
Location Contig101376: 1150-1585
Sequence    

Annotation

kegg
ID rcu:RCOM_1061390
description hypothetical protein
nr
ID XP_002528933.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSG4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1061390 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101376_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001258_070 0.2376488509 - - conserved hypothetical protein [Ricinus communis]
3 Hb_017469_090 0.2398910962 - - Integrase, catalytic region, Zinc finger, CCHC-type, Peptidase aspartic, catalytic, putative [Theobroma cacao]
4 Hb_152868_010 0.2430863465 rubber biosynthesis Gene Name: REF5 small rubber particle protein [Hevea brasiliensis]
5 Hb_036026_010 0.2495620564 transcription factor TF Family: FAR1 FAR-RED IMPAIRED RESPONSE [Medicago truncatula]
6 Hb_001005_180 0.2528247393 - - hypothetical protein Csa_5G464830 [Cucumis sativus]
7 Hb_001898_170 0.2893138889 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007113_030 0.3080381391 - - -
9 Hb_001538_170 0.3183458389 - - -
10 Hb_001863_200 0.328989441 - - chloroplast 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Hevea brasiliensis]
11 Hb_000705_110 0.3329919154 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
12 Hb_003159_060 0.34418075 - - Uncharacterized protein TCM_001961 [Theobroma cacao]
13 Hb_000739_230 0.3449403809 - - PREDICTED: AT-hook motif nuclear-localized protein 22 [Jatropha curcas]
14 Hb_001633_120 0.346190821 - - PREDICTED: uncharacterized protein LOC105630199 [Jatropha curcas]
15 Hb_007403_040 0.3468044618 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001195_240 0.3482938779 transcription factor TF Family: MYB-related PREDICTED: protein RADIALIS-like 3 [Jatropha curcas]
17 Hb_173741_010 0.3491101404 - - PREDICTED: caffeoyl-CoA O-methyltransferase isoform X3 [Musa acuminata subsp. malaccensis]
18 Hb_000147_010 0.3524546684 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
19 Hb_000364_200 0.3552638688 - - o-methyltransferase, putative [Ricinus communis]
20 Hb_000116_600 0.3575742948 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]

Gene co-expression network

sample Hb_101376_010 Hb_101376_010 Hb_001258_070 Hb_001258_070 Hb_101376_010--Hb_001258_070 Hb_017469_090 Hb_017469_090 Hb_101376_010--Hb_017469_090 Hb_152868_010 Hb_152868_010 Hb_101376_010--Hb_152868_010 Hb_036026_010 Hb_036026_010 Hb_101376_010--Hb_036026_010 Hb_001005_180 Hb_001005_180 Hb_101376_010--Hb_001005_180 Hb_001898_170 Hb_001898_170 Hb_101376_010--Hb_001898_170 Hb_001258_070--Hb_001898_170 Hb_003159_060 Hb_003159_060 Hb_001258_070--Hb_003159_060 Hb_000365_150 Hb_000365_150 Hb_001258_070--Hb_000365_150 Hb_000345_180 Hb_000345_180 Hb_001258_070--Hb_000345_180 Hb_007113_030 Hb_007113_030 Hb_001258_070--Hb_007113_030 Hb_001538_170 Hb_001538_170 Hb_017469_090--Hb_001538_170 Hb_017469_090--Hb_001005_180 Hb_001198_140 Hb_001198_140 Hb_017469_090--Hb_001198_140 Hb_000928_290 Hb_000928_290 Hb_017469_090--Hb_000928_290 Hb_017469_090--Hb_152868_010 Hb_152868_010--Hb_007113_030 Hb_000925_120 Hb_000925_120 Hb_152868_010--Hb_000925_120 Hb_055154_010 Hb_055154_010 Hb_152868_010--Hb_055154_010 Hb_116783_010 Hb_116783_010 Hb_152868_010--Hb_116783_010 Hb_001633_120 Hb_001633_120 Hb_152868_010--Hb_001633_120 Hb_090510_010 Hb_090510_010 Hb_152868_010--Hb_090510_010 Hb_172572_010 Hb_172572_010 Hb_036026_010--Hb_172572_010 Hb_036026_010--Hb_001258_070 Hb_036026_010--Hb_001898_170 Hb_000737_020 Hb_000737_020 Hb_036026_010--Hb_000737_020 Hb_036026_010--Hb_003159_060 Hb_001005_180--Hb_152868_010 Hb_000364_200 Hb_000364_200 Hb_001005_180--Hb_000364_200 Hb_001005_180--Hb_001538_170 Hb_000251_060 Hb_000251_060 Hb_001005_180--Hb_000251_060 Hb_001898_170--Hb_003159_060 Hb_001898_170--Hb_000345_180 Hb_001898_170--Hb_000365_150 Hb_001301_140 Hb_001301_140 Hb_001898_170--Hb_001301_140 Hb_183671_010 Hb_183671_010 Hb_001898_170--Hb_183671_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.239695 0 0.0969684 0.32903 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.404661 0

CAGE analysis