Hb_101393_010

Information

Type -
Description -
Location Contig101393: 75-554
Sequence    

Annotation

kegg
ID rcu:RCOM_0174470
description hypothetical protein
nr
ID XP_002527482.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SNB3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0174470 PE=4 SV=1
Gene Ontology
ID GO:0043167
description leucine-rich repeat containing protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101393_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000907_040 0.1938233369 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_017895_010 0.2207156005 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
4 Hb_000089_230 0.2210938933 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
5 Hb_003384_050 0.2211175609 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_000290_010 0.221285373 - - -
7 Hb_002805_080 0.2213347529 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
8 Hb_000105_090 0.2214283851 - - -
9 Hb_002307_060 0.22143793 - - -
10 Hb_001631_120 0.2215030549 - - unnamed protein product [Vitis vinifera]
11 Hb_000705_310 0.2215683589 - - hypothetical protein POPTR_0001s03390g [Populus trichocarpa]
12 Hb_011781_050 0.222583805 - - -
13 Hb_027402_030 0.2255806073 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
14 Hb_005181_020 0.2291390018 - - Pectinesterase-2 precursor, putative [Ricinus communis]
15 Hb_003494_250 0.230420586 - - -
16 Hb_004021_110 0.2347832744 - - -
17 Hb_001217_030 0.2452212224 - - -
18 Hb_005357_190 0.2455853745 - - Protein COBRA precursor, putative [Ricinus communis]
19 Hb_003462_130 0.2549257122 - - -
20 Hb_141199_010 0.2615349177 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_101393_010 Hb_101393_010 Hb_000907_040 Hb_000907_040 Hb_101393_010--Hb_000907_040 Hb_017895_010 Hb_017895_010 Hb_101393_010--Hb_017895_010 Hb_000089_230 Hb_000089_230 Hb_101393_010--Hb_000089_230 Hb_003384_050 Hb_003384_050 Hb_101393_010--Hb_003384_050 Hb_000290_010 Hb_000290_010 Hb_101393_010--Hb_000290_010 Hb_002805_080 Hb_002805_080 Hb_101393_010--Hb_002805_080 Hb_000907_040--Hb_017895_010 Hb_001032_030 Hb_001032_030 Hb_000907_040--Hb_001032_030 Hb_001278_080 Hb_001278_080 Hb_000907_040--Hb_001278_080 Hb_002023_040 Hb_002023_040 Hb_000907_040--Hb_002023_040 Hb_012150_050 Hb_012150_050 Hb_000907_040--Hb_012150_050 Hb_017895_010--Hb_001278_080 Hb_017895_010--Hb_001032_030 Hb_000053_050 Hb_000053_050 Hb_017895_010--Hb_000053_050 Hb_002204_040 Hb_002204_040 Hb_017895_010--Hb_002204_040 Hb_000089_230--Hb_003384_050 Hb_000089_230--Hb_002805_080 Hb_000105_090 Hb_000105_090 Hb_000089_230--Hb_000105_090 Hb_001631_120 Hb_001631_120 Hb_000089_230--Hb_001631_120 Hb_000705_310 Hb_000705_310 Hb_000089_230--Hb_000705_310 Hb_000089_230--Hb_000290_010 Hb_003384_050--Hb_002805_080 Hb_003384_050--Hb_000105_090 Hb_003384_050--Hb_001631_120 Hb_003384_050--Hb_000705_310 Hb_003384_050--Hb_000290_010 Hb_002307_060 Hb_002307_060 Hb_000290_010--Hb_002307_060 Hb_011781_050 Hb_011781_050 Hb_000290_010--Hb_011781_050 Hb_000290_010--Hb_002805_080 Hb_000290_010--Hb_000105_090 Hb_002805_080--Hb_000105_090 Hb_002805_080--Hb_001631_120 Hb_002805_080--Hb_000705_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.334066 0.0728325 0 0.365003
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis