Hb_101705_020

Information

Type -
Description -
Location Contig101705: 10358-10996
Sequence    

Annotation

kegg
ID rcu:RCOM_0788110
description hypothetical protein
nr
ID XP_002531110.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P93823
description RING-H2 finger protein ATL1 OS=Arabidopsis thaliana GN=ATL1 PE=2 SV=1
trembl
ID B9SYP1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0788110 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl66-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101705_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005601_050 0.2614384368 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
3 Hb_123560_030 0.3296429508 - - UDP-glucosyltransferase, putative [Ricinus communis]
4 Hb_001001_050 0.3497685781 - - CXE protein [Hevea brasiliensis]
5 Hb_119960_010 0.3530389116 - - PREDICTED: pectinesterase-like [Populus euphratica]
6 Hb_006620_080 0.353436337 - - hypothetical protein JCGZ_12043 [Jatropha curcas]
7 Hb_011364_030 0.3545059633 - - PREDICTED: U-box domain-containing protein 51 [Jatropha curcas]
8 Hb_001589_070 0.3636566538 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_005542_100 0.3709851518 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0013s03910g [Populus trichocarpa]
10 Hb_009193_080 0.3731351036 - - -
11 Hb_002235_270 0.3772022932 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 100 [Jatropha curcas]
12 Hb_000424_080 0.3788846624 - - PREDICTED: endoglucanase 16 [Jatropha curcas]
13 Hb_115045_010 0.3847718433 - - ATP binding protein, putative [Ricinus communis]
14 Hb_142068_020 0.3893252503 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
15 Hb_000454_020 0.3895093233 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_023051_010 0.3901830471 - - PREDICTED: putative amidase C869.01 [Populus euphratica]
17 Hb_000656_130 0.3906084929 - - hypothetical protein PRUPE_ppa026157mg, partial [Prunus persica]
18 Hb_187661_010 0.3925821436 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
19 Hb_000101_180 0.3959258489 - - -
20 Hb_004449_230 0.3983836471 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_101705_020 Hb_101705_020 Hb_005601_050 Hb_005601_050 Hb_101705_020--Hb_005601_050 Hb_123560_030 Hb_123560_030 Hb_101705_020--Hb_123560_030 Hb_001001_050 Hb_001001_050 Hb_101705_020--Hb_001001_050 Hb_119960_010 Hb_119960_010 Hb_101705_020--Hb_119960_010 Hb_006620_080 Hb_006620_080 Hb_101705_020--Hb_006620_080 Hb_011364_030 Hb_011364_030 Hb_101705_020--Hb_011364_030 Hb_115045_010 Hb_115045_010 Hb_005601_050--Hb_115045_010 Hb_005016_070 Hb_005016_070 Hb_005601_050--Hb_005016_070 Hb_037497_010 Hb_037497_010 Hb_005601_050--Hb_037497_010 Hb_005741_010 Hb_005741_010 Hb_005601_050--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_005601_050--Hb_004458_050 Hb_000377_140 Hb_000377_140 Hb_123560_030--Hb_000377_140 Hb_144547_010 Hb_144547_010 Hb_123560_030--Hb_144547_010 Hb_009102_020 Hb_009102_020 Hb_123560_030--Hb_009102_020 Hb_005542_100 Hb_005542_100 Hb_123560_030--Hb_005542_100 Hb_001449_060 Hb_001449_060 Hb_123560_030--Hb_001449_060 Hb_123560_030--Hb_001001_050 Hb_000424_080 Hb_000424_080 Hb_001001_050--Hb_000424_080 Hb_002235_270 Hb_002235_270 Hb_001001_050--Hb_002235_270 Hb_004449_230 Hb_004449_230 Hb_001001_050--Hb_004449_230 Hb_004064_030 Hb_004064_030 Hb_001001_050--Hb_004064_030 Hb_000668_090 Hb_000668_090 Hb_001001_050--Hb_000668_090 Hb_000964_100 Hb_000964_100 Hb_001001_050--Hb_000964_100 Hb_119960_010--Hb_006620_080 Hb_119960_010--Hb_011364_030 Hb_009193_080 Hb_009193_080 Hb_119960_010--Hb_009193_080 Hb_003902_080 Hb_003902_080 Hb_119960_010--Hb_003902_080 Hb_032907_010 Hb_032907_010 Hb_119960_010--Hb_032907_010 Hb_000116_600 Hb_000116_600 Hb_119960_010--Hb_000116_600 Hb_006620_080--Hb_011364_030 Hb_006620_080--Hb_009193_080 Hb_006620_080--Hb_032907_010 Hb_006620_080--Hb_003902_080 Hb_006620_080--Hb_000116_600 Hb_011364_030--Hb_009193_080 Hb_011364_030--Hb_032907_010 Hb_011364_030--Hb_003902_080 Hb_011364_030--Hb_000116_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0794977 0 0 0.0414656 0 0.0353472
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis