Hb_101705_030

Information

Type -
Description -
Location Contig101705: 11652-14537
Sequence    

Annotation

kegg
ID cic:CICLE_v10032980mg
description hypothetical protein
nr
ID XP_006436065.1
description hypothetical protein CICLE_v10032980mg [Citrus clementina]
swissprot
ID Q9AT35
description 60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1
trembl
ID A0A067FK20
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031766mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l23a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00798: 11806-14692 , PASA_asmbl_00799: 11766-14638
cDNA
(Sanger)
(ID:Location)		 039_E04.ab1: 11833-14692

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101705_030 0.0 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
2 Hb_002874_190 0.0701287621 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
3 Hb_006117_070 0.0731039155 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
4 Hb_002864_050 0.0732495051 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
5 Hb_158467_010 0.0754683973 - - transporter, putative [Ricinus communis]
6 Hb_001140_060 0.076199012 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
7 Hb_001604_080 0.0762759612 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
8 Hb_000102_020 0.077491093 - - hypothetical protein JCGZ_11933 [Jatropha curcas]
9 Hb_000086_070 0.0780526966 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
10 Hb_012799_160 0.0793122544 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
11 Hb_001821_010 0.0828925792 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
12 Hb_094608_010 0.0831314831 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
13 Hb_165132_010 0.0836059137 - - PREDICTED: uncharacterized protein LOC105134496 [Populus euphratica]
14 Hb_168054_010 0.0839004134 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
15 Hb_000815_320 0.0852811309 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
16 Hb_009666_040 0.0853625811 - - glutathione transferase, putative [Ricinus communis]
17 Hb_008300_010 0.0854841199 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
18 Hb_000529_190 0.085580569 - - PREDICTED: magnesium-dependent phosphatase 1-like [Jatropha curcas]
19 Hb_004032_010 0.0857943075 - - PREDICTED: uncharacterized protein LOC105635123 [Jatropha curcas]
20 Hb_000926_250 0.0860685095 - - hypothetical protein POPTR_0011s08930g [Populus trichocarpa]

Gene co-expression network

sample Hb_101705_030 Hb_101705_030 Hb_002874_190 Hb_002874_190 Hb_101705_030--Hb_002874_190 Hb_006117_070 Hb_006117_070 Hb_101705_030--Hb_006117_070 Hb_002864_050 Hb_002864_050 Hb_101705_030--Hb_002864_050 Hb_158467_010 Hb_158467_010 Hb_101705_030--Hb_158467_010 Hb_001140_060 Hb_001140_060 Hb_101705_030--Hb_001140_060 Hb_001604_080 Hb_001604_080 Hb_101705_030--Hb_001604_080 Hb_003055_120 Hb_003055_120 Hb_002874_190--Hb_003055_120 Hb_005539_350 Hb_005539_350 Hb_002874_190--Hb_005539_350 Hb_165132_010 Hb_165132_010 Hb_002874_190--Hb_165132_010 Hb_003687_110 Hb_003687_110 Hb_002874_190--Hb_003687_110 Hb_006541_030 Hb_006541_030 Hb_002874_190--Hb_006541_030 Hb_000840_030 Hb_000840_030 Hb_002874_190--Hb_000840_030 Hb_006117_070--Hb_001140_060 Hb_005289_030 Hb_005289_030 Hb_006117_070--Hb_005289_030 Hb_000230_510 Hb_000230_510 Hb_006117_070--Hb_000230_510 Hb_006117_070--Hb_006541_030 Hb_012753_160 Hb_012753_160 Hb_006117_070--Hb_012753_160 Hb_000029_200 Hb_000029_200 Hb_002864_050--Hb_000029_200 Hb_002830_020 Hb_002830_020 Hb_002864_050--Hb_002830_020 Hb_007416_030 Hb_007416_030 Hb_002864_050--Hb_007416_030 Hb_002864_050--Hb_165132_010 Hb_002864_050--Hb_002874_190 Hb_032264_110 Hb_032264_110 Hb_158467_010--Hb_032264_110 Hb_012053_070 Hb_012053_070 Hb_158467_010--Hb_012053_070 Hb_000671_090 Hb_000671_090 Hb_158467_010--Hb_000671_090 Hb_065525_020 Hb_065525_020 Hb_158467_010--Hb_065525_020 Hb_000638_250 Hb_000638_250 Hb_158467_010--Hb_000638_250 Hb_009773_020 Hb_009773_020 Hb_158467_010--Hb_009773_020 Hb_001140_060--Hb_012753_160 Hb_008300_010 Hb_008300_010 Hb_001140_060--Hb_008300_010 Hb_000479_010 Hb_000479_010 Hb_001140_060--Hb_000479_010 Hb_008878_030 Hb_008878_030 Hb_001140_060--Hb_008878_030 Hb_010180_020 Hb_010180_020 Hb_001604_080--Hb_010180_020 Hb_000815_040 Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
176.846 51.5874 134.614 135.74 129.351 246.749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
248.748 354.121 272.419 101.136 78.2254

CAGE analysis