Hb_101724_010

Information

Type -
Description -
Location Contig101724: 208-612
Sequence    

Annotation

kegg
ID pop:POPTR_0005s10570g
description POPTRDRAFT_558796; glutamate receptor family protein
nr
ID XP_002306436.1
description glutamate receptor family protein [Populus trichocarpa]
swissprot
ID Q84W41
description Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1
trembl
ID B9H686
description Glutamate receptor OS=Populus trichocarpa GN=POPTR_0005s10570g PE=3 SV=1
Gene Ontology
ID GO:0016021
description glutamate receptor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101724_010 0.0 - - glutamate receptor family protein [Populus trichocarpa]
2 Hb_093541_010 0.0010450369 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000087_110 0.003009234 - - conserved hypothetical protein [Ricinus communis]
4 Hb_006198_160 0.0052665747 - - hypothetical protein POPTR_0002s24290g [Populus trichocarpa]
5 Hb_015447_010 0.0074768349 - - PREDICTED: uncharacterized protein LOC105111046 [Populus euphratica]
6 Hb_005081_050 0.0098331657 transcription factor TF Family: MYB-related PREDICTED: transcription factor WER-like [Prunus mume]
7 Hb_073680_010 0.01168644 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
8 Hb_157950_010 0.0117993312 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 isoform X1 [Jatropha curcas]
9 Hb_003424_040 0.0130934973 - - PREDICTED: putative disease resistance protein RGA1 [Eucalyptus grandis]
10 Hb_003849_210 0.0137479435 transcription factor TF Family: ERF hypothetical protein RCOM_0793640 [Ricinus communis]
11 Hb_001922_140 0.0145309937 - - conserved hypothetical protein [Ricinus communis]
12 Hb_010128_140 0.0162931504 - - hypothetical protein JCGZ_23164 [Jatropha curcas]
13 Hb_001552_010 0.0197634417 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005356_020 0.0204924298 - - glutaredoxin, grx, putative [Ricinus communis]
15 Hb_003687_060 0.0241980889 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003038_020 0.024924003 - - unnamed protein product [Coffea canephora]
17 Hb_005333_090 0.0256817927 - - PREDICTED: mitochondrial uncoupling protein 5 [Jatropha curcas]
18 Hb_149495_010 0.0264642697 - - putative starch phosphorylase, partial [Sorghum bicolor]
19 Hb_027136_030 0.026959326 - - PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
20 Hb_002289_160 0.0273910413 - - Polygalacturonase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_101724_010 Hb_101724_010 Hb_093541_010 Hb_093541_010 Hb_101724_010--Hb_093541_010 Hb_000087_110 Hb_000087_110 Hb_101724_010--Hb_000087_110 Hb_006198_160 Hb_006198_160 Hb_101724_010--Hb_006198_160 Hb_015447_010 Hb_015447_010 Hb_101724_010--Hb_015447_010 Hb_005081_050 Hb_005081_050 Hb_101724_010--Hb_005081_050 Hb_073680_010 Hb_073680_010 Hb_101724_010--Hb_073680_010 Hb_093541_010--Hb_000087_110 Hb_093541_010--Hb_006198_160 Hb_093541_010--Hb_015447_010 Hb_093541_010--Hb_005081_050 Hb_093541_010--Hb_073680_010 Hb_000087_110--Hb_005081_050 Hb_000087_110--Hb_006198_160 Hb_000087_110--Hb_073680_010 Hb_157950_010 Hb_157950_010 Hb_000087_110--Hb_157950_010 Hb_006198_160--Hb_015447_010 Hb_003849_210 Hb_003849_210 Hb_006198_160--Hb_003849_210 Hb_010128_140 Hb_010128_140 Hb_006198_160--Hb_010128_140 Hb_015447_010--Hb_003849_210 Hb_015447_010--Hb_010128_140 Hb_015447_010--Hb_000087_110 Hb_005081_050--Hb_073680_010 Hb_005081_050--Hb_157950_010 Hb_003424_040 Hb_003424_040 Hb_005081_050--Hb_003424_040 Hb_001922_140 Hb_001922_140 Hb_005081_050--Hb_001922_140 Hb_073680_010--Hb_157950_010 Hb_073680_010--Hb_003424_040 Hb_073680_010--Hb_001922_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0693735 0.593366 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis