Hb_101808_010

Information

Type -
Description -
Location Contig101808: 1822-3550
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02060g
description POPTRDRAFT_807852; hypothetical protein
nr
ID XP_012089383.1
description PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
swissprot
ID Q5G1T1
description Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1
trembl
ID A0A067JII0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23574 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101808_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
2 Hb_003906_090 0.1335249461 - - PREDICTED: pentatricopeptide repeat-containing protein At4g38010 [Jatropha curcas]
3 Hb_170698_010 0.1371224216 - - PREDICTED: uncharacterized protein LOC104120414 [Nicotiana tomentosiformis]
4 Hb_001189_050 0.1385732839 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
5 Hb_001294_010 0.1510763551 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
6 Hb_001898_070 0.1647065708 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16610 [Jatropha curcas]
7 Hb_001357_010 0.1648309817 - - -
8 Hb_000002_050 0.1672767419 - - PREDICTED: pentatricopeptide repeat-containing protein At4g33990 [Jatropha curcas]
9 Hb_002307_170 0.1695934472 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02750-like [Jatropha curcas]
10 Hb_010608_050 0.1699946607 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
11 Hb_004846_070 0.1709833143 - - PREDICTED: pentatricopeptide repeat-containing protein At3g14730 [Populus euphratica]
12 Hb_007645_080 0.1731035405 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g52630 [Jatropha curcas]
13 Hb_001090_050 0.1783186125 - - PREDICTED: mediator of RNA polymerase II transcription subunit 1 isoform X1 [Jatropha curcas]
14 Hb_092107_010 0.1786707035 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000019_060 0.1805283812 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
16 Hb_025557_030 0.1837850068 - - PREDICTED: pentatricopeptide repeat-containing protein At1g74600, chloroplastic [Jatropha curcas]
17 Hb_172932_010 0.1865420656 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000318_330 0.1866961221 - - PREDICTED: pentatricopeptide repeat-containing protein At2g15630, mitochondrial [Jatropha curcas]
19 Hb_001373_180 0.1871468925 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
20 Hb_002235_280 0.1876165584 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15300 [Jatropha curcas]

Gene co-expression network

sample Hb_101808_010 Hb_101808_010 Hb_003906_090 Hb_003906_090 Hb_101808_010--Hb_003906_090 Hb_170698_010 Hb_170698_010 Hb_101808_010--Hb_170698_010 Hb_001189_050 Hb_001189_050 Hb_101808_010--Hb_001189_050 Hb_001294_010 Hb_001294_010 Hb_101808_010--Hb_001294_010 Hb_001898_070 Hb_001898_070 Hb_101808_010--Hb_001898_070 Hb_001357_010 Hb_001357_010 Hb_101808_010--Hb_001357_010 Hb_003906_090--Hb_001189_050 Hb_029510_040 Hb_029510_040 Hb_003906_090--Hb_029510_040 Hb_000019_060 Hb_000019_060 Hb_003906_090--Hb_000019_060 Hb_007645_080 Hb_007645_080 Hb_003906_090--Hb_007645_080 Hb_003906_090--Hb_001357_010 Hb_034271_030 Hb_034271_030 Hb_170698_010--Hb_034271_030 Hb_001226_020 Hb_001226_020 Hb_170698_010--Hb_001226_020 Hb_000002_050 Hb_000002_050 Hb_170698_010--Hb_000002_050 Hb_170698_010--Hb_001898_070 Hb_000244_160 Hb_000244_160 Hb_170698_010--Hb_000244_160 Hb_011030_020 Hb_011030_020 Hb_001189_050--Hb_011030_020 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_010608_050 Hb_010608_050 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001189_050--Hb_001357_010 Hb_092107_010 Hb_092107_010 Hb_001294_010--Hb_092107_010 Hb_001014_230 Hb_001014_230 Hb_001294_010--Hb_001014_230 Hb_001294_010--Hb_001357_010 Hb_003294_100 Hb_003294_100 Hb_001294_010--Hb_003294_100 Hb_002307_170 Hb_002307_170 Hb_001294_010--Hb_002307_170 Hb_004056_030 Hb_004056_030 Hb_001294_010--Hb_004056_030 Hb_001898_070--Hb_002307_170 Hb_004846_070 Hb_004846_070 Hb_001898_070--Hb_004846_070 Hb_001898_070--Hb_000002_050 Hb_002585_020 Hb_002585_020 Hb_001898_070--Hb_002585_020 Hb_000340_390 Hb_000340_390 Hb_001898_070--Hb_000340_390 Hb_001454_190 Hb_001454_190 Hb_001898_070--Hb_001454_190 Hb_001357_010--Hb_092107_010 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070 Hb_001357_010--Hb_029510_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0713862 0.088015 0 0.0516213 0.0655347 0.209711
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0930443 0.341603 0.458536 0.16556 0.153178

CAGE analysis