Hb_101832_010

Information

Type -
Description -
Location Contig101832: 1001-4410
Sequence    

Annotation

kegg
ID rcu:RCOM_1095660
description nitrate transporter, putative
nr
ID XP_002524664.1
description nitrate transporter, putative [Ricinus communis]
swissprot
ID Q9LPV5
description High affinity nitrate transporter 2.5 OS=Arabidopsis thaliana GN=NRT2.5 PE=2 SV=1
trembl
ID B9SF95
description Nitrate transporter, putative OS=Ricinus communis GN=RCOM_1095660 PE=4 SV=1
Gene Ontology
ID GO:0016021
description high affinity nitrate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00903: 1306-4405
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101832_010 0.0 - - nitrate transporter, putative [Ricinus communis]
2 Hb_002226_030 0.1134049472 - - PREDICTED: high affinity nitrate transporter 2.7 [Jatropha curcas]
3 Hb_000345_390 0.1170448688 - - hypothetical protein JCGZ_23349 [Jatropha curcas]
4 Hb_116349_100 0.1292131921 rubber biosynthesis Gene Name: Phosphomevalonate kinase phosphomevalonate kinase [Hevea brasiliensis]
5 Hb_001053_180 0.1362955567 - - protein binding protein, putative [Ricinus communis]
6 Hb_000630_070 0.1407600279 - - PREDICTED: cell division protein FtsZ homolog 2-1, chloroplastic [Jatropha curcas]
7 Hb_002054_010 0.1412605395 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
8 Hb_000997_270 0.1433224795 - - PREDICTED: putative ion channel POLLUX-like 2 [Jatropha curcas]
9 Hb_000127_010 0.1457084456 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Populus euphratica]
10 Hb_000316_050 0.1480499666 - - enoyl-ACP reductase [Vernicia fordii]
11 Hb_000096_090 0.1481605579 - - hypothetical protein JCGZ_12551 [Jatropha curcas]
12 Hb_002963_020 0.1485983021 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001811_140 0.1513546301 - - hypothetical protein POPTR_0007s03140g [Populus trichocarpa]
14 Hb_000505_010 0.1516615936 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
15 Hb_007672_050 0.1541009126 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
16 Hb_002111_050 0.1589897074 - - PREDICTED: uncharacterized protein LOC105641242 [Jatropha curcas]
17 Hb_024682_010 0.1628428914 - - sterol isomerase, putative [Ricinus communis]
18 Hb_000208_120 0.1635235714 - - PREDICTED: CAP-Gly domain-containing linker protein 1-like [Jatropha curcas]
19 Hb_000331_440 0.1644736903 - - hypothetical protein POPTR_0015s10290g [Populus trichocarpa]
20 Hb_000236_070 0.1660272552 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_101832_010 Hb_101832_010 Hb_002226_030 Hb_002226_030 Hb_101832_010--Hb_002226_030 Hb_000345_390 Hb_000345_390 Hb_101832_010--Hb_000345_390 Hb_116349_100 Hb_116349_100 Hb_101832_010--Hb_116349_100 Hb_001053_180 Hb_001053_180 Hb_101832_010--Hb_001053_180 Hb_000630_070 Hb_000630_070 Hb_101832_010--Hb_000630_070 Hb_002054_010 Hb_002054_010 Hb_101832_010--Hb_002054_010 Hb_000997_270 Hb_000997_270 Hb_002226_030--Hb_000997_270 Hb_000127_010 Hb_000127_010 Hb_002226_030--Hb_000127_010 Hb_002111_050 Hb_002111_050 Hb_002226_030--Hb_002111_050 Hb_000041_080 Hb_000041_080 Hb_002226_030--Hb_000041_080 Hb_003376_100 Hb_003376_100 Hb_002226_030--Hb_003376_100 Hb_000345_390--Hb_001053_180 Hb_000345_390--Hb_116349_100 Hb_003683_120 Hb_003683_120 Hb_000345_390--Hb_003683_120 Hb_000345_390--Hb_000127_010 Hb_024682_010 Hb_024682_010 Hb_000345_390--Hb_024682_010 Hb_003020_020 Hb_003020_020 Hb_000345_390--Hb_003020_020 Hb_116349_100--Hb_001053_180 Hb_116349_100--Hb_003020_020 Hb_000505_010 Hb_000505_010 Hb_116349_100--Hb_000505_010 Hb_001959_070 Hb_001959_070 Hb_116349_100--Hb_001959_070 Hb_000096_090 Hb_000096_090 Hb_116349_100--Hb_000096_090 Hb_001053_180--Hb_024682_010 Hb_001053_180--Hb_000096_090 Hb_001053_180--Hb_000127_010 Hb_001031_080 Hb_001031_080 Hb_001053_180--Hb_001031_080 Hb_164926_030 Hb_164926_030 Hb_000630_070--Hb_164926_030 Hb_002496_050 Hb_002496_050 Hb_000630_070--Hb_002496_050 Hb_007672_050 Hb_007672_050 Hb_000630_070--Hb_007672_050 Hb_000630_070--Hb_000096_090 Hb_002253_070 Hb_002253_070 Hb_000630_070--Hb_002253_070 Hb_002681_020 Hb_002681_020 Hb_000630_070--Hb_002681_020 Hb_000331_440 Hb_000331_440 Hb_002054_010--Hb_000331_440 Hb_002054_010--Hb_001053_180 Hb_000316_050 Hb_000316_050 Hb_002054_010--Hb_000316_050 Hb_002054_010--Hb_000096_090 Hb_000630_040 Hb_000630_040 Hb_002054_010--Hb_000630_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
47.2002 2.1725 13.064 8.07452 38.6166 21.2161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.679 32.8621 34.4859 4.52904 34.1335

CAGE analysis