Hb_102011_010

Information

Type -
Description -
Location Contig102011: 203-1446
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102011_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_001485_010 0.1091481271 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
3 Hb_053125_010 0.1440423916 - - PREDICTED: uncharacterized protein LOC104881508 [Vitis vinifera]
4 Hb_001091_020 0.1972002583 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
5 Hb_136880_010 0.2023743249 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
6 Hb_006096_020 0.2027291396 - - Os06g0343500 [Oryza sativa Japonica Group]
7 Hb_012788_010 0.2068209331 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
8 Hb_000384_050 0.2078233952 - - hypothetical protein POPTR_0077s002402g, partial [Populus trichocarpa]
9 Hb_001086_030 0.2140985177 - - Disease resistance protein RPS5, putative [Ricinus communis]
10 Hb_000816_020 0.2157759231 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
11 Hb_000141_010 0.2210841274 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]
12 Hb_001373_010 0.2218012075 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
13 Hb_000840_040 0.2226996217 - - monoxygenase, putative [Ricinus communis]
14 Hb_006916_190 0.2236665793 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_071160_010 0.2238205705 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_167977_010 0.2239939218 - - hypothetical protein POPTR_0185s002102g, partial [Populus trichocarpa]
17 Hb_002918_020 0.2241564684 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF1.4 isoform X1 [Jatropha curcas]
18 Hb_117168_010 0.2245802991 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
19 Hb_003517_020 0.2250358877 desease resistance Gene Name: ABC_membrane PREDICTED: ABC transporter C family member 3-like [Jatropha curcas]
20 Hb_000313_370 0.2272130811 - - ABC transporter family protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_102011_010 Hb_102011_010 Hb_001485_010 Hb_001485_010 Hb_102011_010--Hb_001485_010 Hb_053125_010 Hb_053125_010 Hb_102011_010--Hb_053125_010 Hb_001091_020 Hb_001091_020 Hb_102011_010--Hb_001091_020 Hb_136880_010 Hb_136880_010 Hb_102011_010--Hb_136880_010 Hb_006096_020 Hb_006096_020 Hb_102011_010--Hb_006096_020 Hb_012788_010 Hb_012788_010 Hb_102011_010--Hb_012788_010 Hb_001485_010--Hb_053125_010 Hb_001485_010--Hb_136880_010 Hb_071160_010 Hb_071160_010 Hb_001485_010--Hb_071160_010 Hb_000233_100 Hb_000233_100 Hb_001485_010--Hb_000233_100 Hb_065500_010 Hb_065500_010 Hb_001485_010--Hb_065500_010 Hb_167977_010 Hb_167977_010 Hb_053125_010--Hb_167977_010 Hb_151706_010 Hb_151706_010 Hb_053125_010--Hb_151706_010 Hb_147218_010 Hb_147218_010 Hb_053125_010--Hb_147218_010 Hb_053125_010--Hb_065500_010 Hb_117168_010 Hb_117168_010 Hb_001091_020--Hb_117168_010 Hb_000313_370 Hb_000313_370 Hb_001091_020--Hb_000313_370 Hb_005880_010 Hb_005880_010 Hb_001091_020--Hb_005880_010 Hb_000141_010 Hb_000141_010 Hb_001091_020--Hb_000141_010 Hb_002218_070 Hb_002218_070 Hb_001091_020--Hb_002218_070 Hb_002660_040 Hb_002660_040 Hb_001091_020--Hb_002660_040 Hb_121992_010 Hb_121992_010 Hb_136880_010--Hb_121992_010 Hb_136880_010--Hb_012788_010 Hb_001304_130 Hb_001304_130 Hb_136880_010--Hb_001304_130 Hb_000383_020 Hb_000383_020 Hb_136880_010--Hb_000383_020 Hb_136880_010--Hb_151706_010 Hb_000816_020 Hb_000816_020 Hb_006096_020--Hb_000816_020 Hb_001677_230 Hb_001677_230 Hb_006096_020--Hb_001677_230 Hb_012023_010 Hb_012023_010 Hb_006096_020--Hb_012023_010 Hb_001619_010 Hb_001619_010 Hb_006096_020--Hb_001619_010 Hb_082683_010 Hb_082683_010 Hb_006096_020--Hb_082683_010 Hb_000059_080 Hb_000059_080 Hb_006096_020--Hb_000059_080 Hb_012788_010--Hb_121992_010 Hb_012788_010--Hb_001304_130 Hb_012788_010--Hb_001485_010 Hb_134279_010 Hb_134279_010 Hb_012788_010--Hb_134279_010 Hb_012788_010--Hb_053125_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0753013 1.70752 0.108639 0.274759 0.274307 0.444434
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0459803 0 0.200689 2.80193 1.33891

CAGE analysis