Hb_102129_010

Information

Type -
Description -
Location Contig102129: 22622-24910
Sequence    

Annotation

kegg
ID rcu:RCOM_0615790
description multicopper oxidase, putative (EC:1.10.3.3)
nr
ID XP_002528421.1
description multicopper oxidase, putative [Ricinus communis]
swissprot
ID Q00624
description L-ascorbate oxidase homolog OS=Brassica napus GN=Bp10 PE=2 SV=1
trembl
ID B9SR02
description Multicopper oxidase, putative OS=Ricinus communis GN=RCOM_0615790 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102129_010 0.0 - - multicopper oxidase, putative [Ricinus communis]
2 Hb_001147_090 0.0634460206 transcription factor TF Family: GRAS DELLA protein GAI1, putative [Ricinus communis]
3 Hb_048476_160 0.1774878148 - - hypothetical protein JCGZ_19593 [Jatropha curcas]
4 Hb_001147_080 0.2042531211 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_145708_010 0.2234096677 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
6 Hb_158803_020 0.2296717836 - - hypothetical protein JCGZ_12890 [Jatropha curcas]
7 Hb_010810_040 0.2482089732 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_003438_060 0.2631806705 - - -
9 Hb_000008_040 0.2775076579 - - hypothetical protein POPTR_0009s01550g [Populus trichocarpa]
10 Hb_000321_010 0.2881265954 - - Chitinase 1 precursor, putative [Ricinus communis]
11 Hb_002078_210 0.290085875 - - PREDICTED: cytochrome P450 78A5-like [Jatropha curcas]
12 Hb_000805_330 0.2961699665 - - PREDICTED: ricin-like [Elaeis guineensis]
13 Hb_107495_050 0.3060907283 transcription factor TF Family: MIKC mads box protein, putative [Ricinus communis]
14 Hb_001114_030 0.3099294035 - - Brown planthopper resistance protein [Oryza sativa Indica Group]
15 Hb_017524_010 0.3101651684 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
16 Hb_000207_420 0.31160159 - - hypothetical protein POPTR_0019s11600g [Populus trichocarpa]
17 Hb_085910_010 0.3169401295 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
18 Hb_005588_140 0.3169495837 - - conserved hypothetical protein [Ricinus communis]
19 Hb_012753_100 0.317139223 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002420_030 0.3174629291 - - Disease resistance protein RPS5, putative [Ricinus communis]

Gene co-expression network

sample Hb_102129_010 Hb_102129_010 Hb_001147_090 Hb_001147_090 Hb_102129_010--Hb_001147_090 Hb_048476_160 Hb_048476_160 Hb_102129_010--Hb_048476_160 Hb_001147_080 Hb_001147_080 Hb_102129_010--Hb_001147_080 Hb_145708_010 Hb_145708_010 Hb_102129_010--Hb_145708_010 Hb_158803_020 Hb_158803_020 Hb_102129_010--Hb_158803_020 Hb_010810_040 Hb_010810_040 Hb_102129_010--Hb_010810_040 Hb_001147_090--Hb_001147_080 Hb_001147_090--Hb_048476_160 Hb_001147_090--Hb_010810_040 Hb_000008_040 Hb_000008_040 Hb_001147_090--Hb_000008_040 Hb_001147_090--Hb_145708_010 Hb_048476_160--Hb_158803_020 Hb_003438_060 Hb_003438_060 Hb_048476_160--Hb_003438_060 Hb_048476_160--Hb_001147_080 Hb_000483_230 Hb_000483_230 Hb_048476_160--Hb_000483_230 Hb_002984_020 Hb_002984_020 Hb_001147_080--Hb_002984_020 Hb_001147_080--Hb_003438_060 Hb_000207_420 Hb_000207_420 Hb_001147_080--Hb_000207_420 Hb_005654_020 Hb_005654_020 Hb_145708_010--Hb_005654_020 Hb_145708_010--Hb_001147_080 Hb_145708_010--Hb_003438_060 Hb_145708_010--Hb_048476_160 Hb_083862_010 Hb_083862_010 Hb_158803_020--Hb_083862_010 Hb_107495_050 Hb_107495_050 Hb_158803_020--Hb_107495_050 Hb_125981_010 Hb_125981_010 Hb_158803_020--Hb_125981_010 Hb_009773_040 Hb_009773_040 Hb_158803_020--Hb_009773_040 Hb_000321_010 Hb_000321_010 Hb_010810_040--Hb_000321_010 Hb_007951_090 Hb_007951_090 Hb_010810_040--Hb_007951_090 Hb_001489_040 Hb_001489_040 Hb_010810_040--Hb_001489_040 Hb_009620_010 Hb_009620_010 Hb_010810_040--Hb_009620_010 Hb_002420_030 Hb_002420_030 Hb_010810_040--Hb_002420_030 Hb_002869_040 Hb_002869_040 Hb_010810_040--Hb_002869_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0402177 0 0.0219256 0.0142908 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis