Hb_102129_070

Information

Type -
Description -
Location Contig102129: 84470-86777
Sequence    

Annotation

kegg
ID cmo:103490249
description coiled-coil domain-containing protein 124
nr
ID XP_008447903.1
description PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
swissprot
ID Q68EY7
description Coiled-coil domain-containing protein 124-A OS=Xenopus laevis GN=ccdc124-a PE=2 SV=1
trembl
ID A0A0A0K4S7
description Uncharacterized protein OS=Cucumis sativus GN=Csa_7G018740 PE=4 SV=1
Gene Ontology
ID GO:0005622
description coiled-coil domain-containing protein 124

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01007: 84208-86692 , PASA_asmbl_01008: 85357-85594
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102129_070 0.0 - - PREDICTED: coiled-coil domain-containing protein 124 [Cucumis melo]
2 Hb_003126_030 0.0733633238 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008554_120 0.0750216341 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
4 Hb_000820_120 0.0824488269 - - PREDICTED: uncharacterized protein LOC105639821 [Jatropha curcas]
5 Hb_005539_190 0.0830956406 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
6 Hb_001083_030 0.0834655913 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
7 Hb_000953_030 0.0847117661 transcription factor TF Family: HSF DNA binding protein, putative [Ricinus communis]
8 Hb_000152_340 0.0897658208 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
9 Hb_000140_080 0.0928544423 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
10 Hb_019153_020 0.0947610485 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
11 Hb_000771_180 0.0970250201 - - polypyrimidine tract binding protein, putative [Ricinus communis]
12 Hb_140049_030 0.097956919 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
13 Hb_005188_060 0.0989820483 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
14 Hb_025669_020 0.101007304 - - conserved hypothetical protein [Ricinus communis]
15 Hb_140049_020 0.1012342039 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
16 Hb_000510_310 0.1024347559 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
17 Hb_002783_310 0.1034469251 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 [Jatropha curcas]
18 Hb_001541_260 0.1038072938 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]
19 Hb_004635_050 0.1040417063 - - nucleolar phosphoprotein, putative [Ricinus communis]
20 Hb_009252_100 0.1040748281 - - PREDICTED: serine/threonine-protein kinase HT1-like [Jatropha curcas]

Gene co-expression network

sample Hb_102129_070 Hb_102129_070 Hb_003126_030 Hb_003126_030 Hb_102129_070--Hb_003126_030 Hb_008554_120 Hb_008554_120 Hb_102129_070--Hb_008554_120 Hb_000820_120 Hb_000820_120 Hb_102129_070--Hb_000820_120 Hb_005539_190 Hb_005539_190 Hb_102129_070--Hb_005539_190 Hb_001083_030 Hb_001083_030 Hb_102129_070--Hb_001083_030 Hb_000953_030 Hb_000953_030 Hb_102129_070--Hb_000953_030 Hb_000140_080 Hb_000140_080 Hb_003126_030--Hb_000140_080 Hb_003126_030--Hb_008554_120 Hb_000152_340 Hb_000152_340 Hb_003126_030--Hb_000152_340 Hb_000406_240 Hb_000406_240 Hb_003126_030--Hb_000406_240 Hb_000169_130 Hb_000169_130 Hb_003126_030--Hb_000169_130 Hb_002301_220 Hb_002301_220 Hb_008554_120--Hb_002301_220 Hb_007982_070 Hb_007982_070 Hb_008554_120--Hb_007982_070 Hb_140049_030 Hb_140049_030 Hb_008554_120--Hb_140049_030 Hb_007229_040 Hb_007229_040 Hb_008554_120--Hb_007229_040 Hb_000771_180 Hb_000771_180 Hb_008554_120--Hb_000771_180 Hb_000820_120--Hb_000169_130 Hb_000441_070 Hb_000441_070 Hb_000820_120--Hb_000441_070 Hb_000046_010 Hb_000046_010 Hb_000820_120--Hb_000046_010 Hb_000820_120--Hb_000152_340 Hb_000345_140 Hb_000345_140 Hb_000820_120--Hb_000345_140 Hb_140049_020 Hb_140049_020 Hb_005539_190--Hb_140049_020 Hb_003040_020 Hb_003040_020 Hb_005539_190--Hb_003040_020 Hb_003540_160 Hb_003540_160 Hb_005539_190--Hb_003540_160 Hb_000032_010 Hb_000032_010 Hb_005539_190--Hb_000032_010 Hb_019153_020 Hb_019153_020 Hb_005539_190--Hb_019153_020 Hb_005539_190--Hb_140049_030 Hb_025669_020 Hb_025669_020 Hb_001083_030--Hb_025669_020 Hb_000946_120 Hb_000946_120 Hb_001083_030--Hb_000946_120 Hb_000032_490 Hb_000032_490 Hb_001083_030--Hb_000032_490 Hb_000365_140 Hb_000365_140 Hb_001083_030--Hb_000365_140 Hb_000107_530 Hb_000107_530 Hb_001083_030--Hb_000107_530 Hb_000953_030--Hb_000152_340 Hb_001946_300 Hb_001946_300 Hb_000953_030--Hb_001946_300 Hb_000953_030--Hb_005539_190 Hb_004635_050 Hb_004635_050 Hb_000953_030--Hb_004635_050 Hb_002326_020 Hb_002326_020 Hb_000953_030--Hb_002326_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
144.57 124.596 77.071 43.4071 188.671 91.8916
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.1931 58.3763 74.6653 73.7737 25.7407

CAGE analysis