Hb_102156_010

Information

Type -
Description -
Location Contig102156: 762-1454
Sequence    

Annotation

kegg
ID rcu:RCOM_1557920
description hypothetical protein
nr
ID XP_002526975.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SLV6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1557920 PE=4 SV=1
Gene Ontology
ID GO:0005737
description protein prune homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102156_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002259_150 0.0917832387 - - BnaC04g40780D [Brassica napus]
3 Hb_000175_400 0.0981465521 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000193_350 0.1018644298 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
5 Hb_000032_540 0.1045272661 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
6 Hb_002272_260 0.1078198154 - - -
7 Hb_004453_150 0.1103580746 - - BnaC02g13240D [Brassica napus]
8 Hb_011016_090 0.110566416 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
9 Hb_000347_340 0.1110592139 - - ring finger, putative [Ricinus communis]
10 Hb_001057_050 0.1122727648 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
11 Hb_000771_100 0.1142338938 - - Os06g0527300 [Oryza sativa Japonica Group]
12 Hb_004117_180 0.1191220746 - - -
13 Hb_000061_330 0.1191802816 - - eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]
14 Hb_011174_010 0.1204421856 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
15 Hb_002259_030 0.125699999 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004143_110 0.1291021509 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
17 Hb_023226_010 0.1324377107 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1 [Jatropha curcas]
18 Hb_007317_060 0.1330502714 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
19 Hb_015057_010 0.1354416885 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
20 Hb_011161_040 0.138202036 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_102156_010 Hb_102156_010 Hb_002259_150 Hb_002259_150 Hb_102156_010--Hb_002259_150 Hb_000175_400 Hb_000175_400 Hb_102156_010--Hb_000175_400 Hb_000193_350 Hb_000193_350 Hb_102156_010--Hb_000193_350 Hb_000032_540 Hb_000032_540 Hb_102156_010--Hb_000032_540 Hb_002272_260 Hb_002272_260 Hb_102156_010--Hb_002272_260 Hb_004453_150 Hb_004453_150 Hb_102156_010--Hb_004453_150 Hb_007317_060 Hb_007317_060 Hb_002259_150--Hb_007317_060 Hb_002259_150--Hb_002272_260 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_002259_150--Hb_004453_150 Hb_002259_150--Hb_000193_350 Hb_000175_400--Hb_000193_350 Hb_002259_030 Hb_002259_030 Hb_000175_400--Hb_002259_030 Hb_000175_400--Hb_004453_150 Hb_025193_050 Hb_025193_050 Hb_000175_400--Hb_025193_050 Hb_011016_090 Hb_011016_090 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_000193_350--Hb_011016_090 Hb_000032_540--Hb_002259_030 Hb_000032_540--Hb_000189_530 Hb_011161_040 Hb_011161_040 Hb_000032_540--Hb_011161_040 Hb_000032_540--Hb_000175_400 Hb_000032_540--Hb_011016_090 Hb_000144_090 Hb_000144_090 Hb_000032_540--Hb_000144_090 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_004453_150--Hb_011161_040 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.15642 1.00116 0.198137 2.59018 2.36618 10.7562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.40991 7.05204 2.98832 1.68038 0.362635

CAGE analysis