Hb_102438_030

Information

Type transcription factor
Description TF Family: C3H
Location Contig102438: 17709-36918
Sequence    

Annotation

kegg
ID pop:POPTR_0010s18390g
description POPTRDRAFT_659387; enhancer of AG-4 1 family protein
nr
ID XP_012072857.1
description PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
swissprot
ID Q941Q3
description Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1
trembl
ID A0A067KR25
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06908 PE=4 SV=1
Gene Ontology
ID GO:0046872
description zinc finger ccch domain-containing protein 37 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01074: 17806-36855 , PASA_asmbl_01075: 20485-26502 , PASA_asmbl_01076: 33218-33579 , PASA_asmbl_01077: 22977-23100
cDNA
(Sanger)
(ID:Location)		 021_J13.ab1: 17893-26215

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102438_030 0.0 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 37-like isoform X1 [Jatropha curcas]
2 Hb_030545_030 0.0525863131 - - PREDICTED: uncharacterized protein LOC105648743 [Jatropha curcas]
3 Hb_000102_050 0.0578947882 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
4 Hb_004032_230 0.0633157254 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]
5 Hb_007017_070 0.0651848155 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
6 Hb_000958_150 0.066889475 - - Actin, putative [Ricinus communis]
7 Hb_000139_320 0.0699379242 - - PREDICTED: E3 ubiquitin-protein ligase RHF1A [Jatropha curcas]
8 Hb_000264_070 0.0700153845 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
9 Hb_000723_110 0.0702706861 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
10 Hb_000189_630 0.0707927346 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_002284_170 0.0712664194 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1b [Jatropha curcas]
12 Hb_000302_170 0.0722989449 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
13 Hb_000866_450 0.0746883825 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
14 Hb_000340_030 0.0752740834 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
15 Hb_002903_140 0.0755674057 - - PREDICTED: uncharacterized protein LOC105649513 [Jatropha curcas]
16 Hb_000809_160 0.0763725413 - - hypothetical protein JCGZ_12355 [Jatropha curcas]
17 Hb_008165_030 0.0796120044 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
18 Hb_152910_010 0.0802638623 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
19 Hb_000227_310 0.0818844323 - - PREDICTED: cyclin-T1-4-like isoform X2 [Jatropha curcas]
20 Hb_000700_060 0.0824819715 - - PREDICTED: uncharacterized protein LOC105644416 [Jatropha curcas]

Gene co-expression network

sample Hb_102438_030 Hb_102438_030 Hb_030545_030 Hb_030545_030 Hb_102438_030--Hb_030545_030 Hb_000102_050 Hb_000102_050 Hb_102438_030--Hb_000102_050 Hb_004032_230 Hb_004032_230 Hb_102438_030--Hb_004032_230 Hb_007017_070 Hb_007017_070 Hb_102438_030--Hb_007017_070 Hb_000958_150 Hb_000958_150 Hb_102438_030--Hb_000958_150 Hb_000139_320 Hb_000139_320 Hb_102438_030--Hb_000139_320 Hb_002903_140 Hb_002903_140 Hb_030545_030--Hb_002903_140 Hb_000227_310 Hb_000227_310 Hb_030545_030--Hb_000227_310 Hb_030545_030--Hb_007017_070 Hb_008165_030 Hb_008165_030 Hb_030545_030--Hb_008165_030 Hb_096819_010 Hb_096819_010 Hb_030545_030--Hb_096819_010 Hb_000102_050--Hb_004032_230 Hb_000340_030 Hb_000340_030 Hb_000102_050--Hb_000340_030 Hb_000529_060 Hb_000529_060 Hb_000102_050--Hb_000529_060 Hb_005333_140 Hb_005333_140 Hb_000102_050--Hb_005333_140 Hb_000302_170 Hb_000302_170 Hb_000102_050--Hb_000302_170 Hb_001534_210 Hb_001534_210 Hb_004032_230--Hb_001534_210 Hb_000264_070 Hb_000264_070 Hb_004032_230--Hb_000264_070 Hb_001231_090 Hb_001231_090 Hb_004032_230--Hb_001231_090 Hb_003849_140 Hb_003849_140 Hb_004032_230--Hb_003849_140 Hb_004410_070 Hb_004410_070 Hb_007017_070--Hb_004410_070 Hb_007017_070--Hb_000227_310 Hb_000723_110 Hb_000723_110 Hb_007017_070--Hb_000723_110 Hb_007017_070--Hb_002903_140 Hb_002284_170 Hb_002284_170 Hb_000958_150--Hb_002284_170 Hb_056987_010 Hb_056987_010 Hb_000958_150--Hb_056987_010 Hb_000958_150--Hb_030545_030 Hb_002092_070 Hb_002092_070 Hb_000958_150--Hb_002092_070 Hb_000958_150--Hb_096819_010 Hb_000139_320--Hb_000340_030 Hb_001723_010 Hb_001723_010 Hb_000139_320--Hb_001723_010 Hb_003711_010 Hb_003711_010 Hb_000139_320--Hb_003711_010 Hb_026980_020 Hb_026980_020 Hb_000139_320--Hb_026980_020 Hb_000174_150 Hb_000174_150 Hb_000139_320--Hb_000174_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.3981 40.2075 32.1776 21.0921 24.9124 16.4829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.23613 9.91005 8.87618 19.052 13.621

CAGE analysis