Hb_102602_020

Information

Type -
Description -
Location Contig102602: 7487-8746
Sequence    

Annotation

kegg
ID cvr:OJ20_p02
description nad4; NADH dehydrogenase subunit 4
nr
ID KJB09790.1
description hypothetical protein B456_001G166300 [Gossypium raimondii]
swissprot
ID Q0H8X6
description NADH-ubiquinone oxidoreductase chain 4 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=ND4 PE=3 SV=1
trembl
ID A0A0D2QRC7
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G166300 PE=4 SV=1
Gene Ontology
ID GO:0005739
description nadh dehydrogenase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102602_020 0.0 - - hypothetical protein B456_001G166300 [Gossypium raimondii]
2 Hb_041813_040 0.1268732106 - - NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5, truncated - sugar beet mitochondrion (mitochondrion) [Beta vulgaris subsp. vulgaris]
3 Hb_006405_040 0.1356118001 - - hypothetical protein VITISV_026680 [Vitis vinifera]
4 Hb_001385_070 0.1450371221 - - hypothetical protein VITISV_019194 [Vitis vinifera]
5 Hb_127552_050 0.1460791276 - - hypothetical protein VITISV_030752 [Vitis vinifera]
6 Hb_000820_100 0.1516600964 - - RNA-directed DNA polymerase [Arachis hypogaea]
7 Hb_007543_020 0.1523336272 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
8 Hb_004520_010 0.1524008691 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
9 Hb_000123_340 0.1557994984 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
10 Hb_000574_330 0.1568637108 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
11 Hb_011649_030 0.165687166 - - hypothetical protein [Vitis hybrid cultivar]
12 Hb_001383_080 0.1686781078 - - OSJNBa0019D11.8 [Oryza sativa Japonica Group]
13 Hb_067472_010 0.1742434473 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
14 Hb_144027_010 0.1801742123 - - -
15 Hb_001366_260 0.1825118973 - - T4.15 [Malus x robusta]
16 Hb_041813_010 0.183725709 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005154_090 0.1839936745 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
18 Hb_002687_070 0.1845255522 - - polyprotein [Ananas comosus]
19 Hb_002013_030 0.1864287588 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]
20 Hb_001250_030 0.1891811239 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_102602_020 Hb_102602_020 Hb_041813_040 Hb_041813_040 Hb_102602_020--Hb_041813_040 Hb_006405_040 Hb_006405_040 Hb_102602_020--Hb_006405_040 Hb_001385_070 Hb_001385_070 Hb_102602_020--Hb_001385_070 Hb_127552_050 Hb_127552_050 Hb_102602_020--Hb_127552_050 Hb_000820_100 Hb_000820_100 Hb_102602_020--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_102602_020--Hb_007543_020 Hb_000574_330 Hb_000574_330 Hb_041813_040--Hb_000574_330 Hb_011649_030 Hb_011649_030 Hb_041813_040--Hb_011649_030 Hb_000352_060 Hb_000352_060 Hb_041813_040--Hb_000352_060 Hb_041813_040--Hb_127552_050 Hb_067472_010 Hb_067472_010 Hb_041813_040--Hb_067472_010 Hb_006405_040--Hb_001385_070 Hb_000803_230 Hb_000803_230 Hb_006405_040--Hb_000803_230 Hb_144027_010 Hb_144027_010 Hb_006405_040--Hb_144027_010 Hb_006405_040--Hb_007543_020 Hb_003900_040 Hb_003900_040 Hb_006405_040--Hb_003900_040 Hb_001385_070--Hb_127552_050 Hb_000123_340 Hb_000123_340 Hb_001385_070--Hb_000123_340 Hb_001385_070--Hb_011649_030 Hb_001793_040 Hb_001793_040 Hb_001385_070--Hb_001793_040 Hb_001385_070--Hb_000574_330 Hb_004520_010 Hb_004520_010 Hb_001385_070--Hb_004520_010 Hb_127552_050--Hb_011649_030 Hb_127552_050--Hb_000123_340 Hb_127552_050--Hb_000574_330 Hb_127552_050--Hb_004520_010 Hb_001366_260 Hb_001366_260 Hb_000820_100--Hb_001366_260 Hb_000820_100--Hb_007543_020 Hb_000820_100--Hb_004520_010 Hb_000173_110 Hb_000173_110 Hb_000820_100--Hb_000173_110 Hb_116784_020 Hb_116784_020 Hb_000820_100--Hb_116784_020 Hb_000820_100--Hb_000123_340 Hb_007543_020--Hb_001366_260 Hb_007543_020--Hb_116784_020 Hb_009434_060 Hb_009434_060 Hb_007543_020--Hb_009434_060 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_007543_020--Hb_000123_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.401523 4.70813 1.09207 1.70124 0.14319 0.310377
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0908233 1.09623 3.59671 21.4611

CAGE analysis