Hb_102602_030

Information

Type -
Description -
Location Contig102602: 8865-9329
Sequence    

Annotation

kegg
ID rcu:RCOM_2007270
description NADH-ubiquinone oxidoreductase chain, putative (EC:1.6.99.5)
nr
ID AGC78953.1
description hypothetical protein (mitochondrion) [Vicia faba]
swissprot
ID Q37617
description NADH-ubiquinone oxidoreductase chain 4 OS=Prototheca wickerhamii GN=ND4 PE=3 SV=1
trembl
ID R4IV43
description Uncharacterized protein OS=Vicia faba GN=nad4 PE=4 SV=1
Gene Ontology
ID GO:0005739
description nadh dehydrogenase subunit partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01105: 8917-9166
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102602_030 0.0 - - hypothetical protein (mitochondrion) [Vicia faba]
2 Hb_171685_040 0.140090192 - - ribosomal protein S13 (mitochondrion) [Hevea brasiliensis]
3 Hb_102602_010 0.1437392487 - - orf175 (mitochondrion) [Panax ginseng]
4 Hb_171685_030 0.1507333882 - - URF-1 [Citrullus lanatus]
5 Hb_027357_010 0.165863536 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_062192_030 0.1735736954 - - ribosomal protein S1 (mitochondrion) [Hevea brasiliensis]
7 Hb_041813_030 0.1824173716 - - cytochrome oxidase subunit 1, partial (mitochondrion) [Calochone redingii]
8 Hb_000159_020 0.1850999257 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
9 Hb_104735_010 0.1885414475 - - cytochrome c biogenesis C (mitochondrion) [Hevea brasiliensis]
10 Hb_088080_030 0.1972552823 - - ribosomal protein S4 [Hevea brasiliensis]
11 Hb_006040_160 0.198219753 - - ribosomal protein S12 (mitochondrion) [Hevea brasiliensis]
12 Hb_034455_010 0.2004483063 - - UDP-glucosyltransferase, putative [Ricinus communis]
13 Hb_062192_060 0.20831721 - - maturase (mitochondrion) [Hevea brasiliensis]
14 Hb_189099_020 0.2104141594 - - NADH dehydrogenase subunit 9 (mitochondrion) [Hevea brasiliensis]
15 Hb_006040_050 0.2105816535 - - conserved hypothetical protein [Ricinus communis]
16 Hb_072212_020 0.2107341621 - - hypothetical protein B456_001G162300 [Gossypium raimondii]
17 Hb_013420_010 0.2118259838 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002482_050 0.2131399289 transcription factor TF Family: NAC F-box family protein [Populus trichocarpa]
19 Hb_005742_010 0.2131771472 - - hypothetical protein, partial [Pseudomonas fluorescens]
20 Hb_042463_070 0.2140123599 - - 60S ribosomal protein L16, putative [Ricinus communis]

Gene co-expression network

sample Hb_102602_030 Hb_102602_030 Hb_171685_040 Hb_171685_040 Hb_102602_030--Hb_171685_040 Hb_102602_010 Hb_102602_010 Hb_102602_030--Hb_102602_010 Hb_171685_030 Hb_171685_030 Hb_102602_030--Hb_171685_030 Hb_027357_010 Hb_027357_010 Hb_102602_030--Hb_027357_010 Hb_062192_030 Hb_062192_030 Hb_102602_030--Hb_062192_030 Hb_041813_030 Hb_041813_030 Hb_102602_030--Hb_041813_030 Hb_006040_050 Hb_006040_050 Hb_171685_040--Hb_006040_050 Hb_171685_040--Hb_027357_010 Hb_013420_010 Hb_013420_010 Hb_171685_040--Hb_013420_010 Hb_072212_020 Hb_072212_020 Hb_171685_040--Hb_072212_020 Hb_005742_010 Hb_005742_010 Hb_171685_040--Hb_005742_010 Hb_102602_010--Hb_062192_030 Hb_008195_080 Hb_008195_080 Hb_102602_010--Hb_008195_080 Hb_102602_010--Hb_041813_030 Hb_006040_160 Hb_006040_160 Hb_102602_010--Hb_006040_160 Hb_141708_010 Hb_141708_010 Hb_102602_010--Hb_141708_010 Hb_000159_020 Hb_000159_020 Hb_171685_030--Hb_000159_020 Hb_062192_060 Hb_062192_060 Hb_171685_030--Hb_062192_060 Hb_034455_010 Hb_034455_010 Hb_171685_030--Hb_034455_010 Hb_171685_030--Hb_171685_040 Hb_171685_030--Hb_005742_010 Hb_013420_020 Hb_013420_020 Hb_027357_010--Hb_013420_020 Hb_156746_010 Hb_156746_010 Hb_027357_010--Hb_156746_010 Hb_012163_050 Hb_012163_050 Hb_027357_010--Hb_012163_050 Hb_027357_010--Hb_041813_030 Hb_027357_010--Hb_013420_010 Hb_189099_020 Hb_189099_020 Hb_062192_030--Hb_189099_020 Hb_062192_030--Hb_041813_030 Hb_042463_070 Hb_042463_070 Hb_062192_030--Hb_042463_070 Hb_001338_080 Hb_001338_080 Hb_062192_030--Hb_001338_080 Hb_062192_030--Hb_006040_160 Hb_034168_070 Hb_034168_070 Hb_062192_030--Hb_034168_070 Hb_041813_030--Hb_042463_070 Hb_041813_030--Hb_156746_010 Hb_077242_020 Hb_077242_020 Hb_041813_030--Hb_077242_020 Hb_006040_030 Hb_006040_030 Hb_041813_030--Hb_006040_030 Hb_013420_050 Hb_013420_050 Hb_041813_030--Hb_013420_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.257707 0.0499226 0.82291 0.130248 0.368113
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.151618 0 1.9857 0.349205 15.7557

CAGE analysis