Hb_102632_010

Information

Type -
Description -
Location Contig102632: 25-405
Sequence    

Annotation

kegg
ID rcu:RCOM_0646320
description hypothetical protein
nr
ID XP_012092198.1
description PREDICTED: CST complex subunit STN1 [Jatropha curcas]
swissprot
ID Q9LMK5
description CST complex subunit STN1 OS=Arabidopsis thaliana GN=STN1 PE=1 SV=1
trembl
ID B9SFH6
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0646320 PE=4 SV=1
Gene Ontology
ID GO:0000784
description cst complex subunit stn1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102632_010 0.0 - - PREDICTED: CST complex subunit STN1 [Jatropha curcas]
2 Hb_000571_010 0.1200823293 - - PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Gossypium raimondii]
3 Hb_000206_190 0.1855946572 - - PREDICTED: F-box/LRR-repeat protein At4g14103-like [Pyrus x bretschneideri]
4 Hb_002307_080 0.2043767919 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000077_220 0.2146517976 - - PREDICTED: uncharacterized protein LOC105647046 [Jatropha curcas]
6 Hb_010712_070 0.2240389471 - - Galactoside 2-alpha-L-fucosyltransferase [Aegilops tauschii]
7 Hb_002471_180 0.2294006596 - - receptor protein kinase, putative [Ricinus communis]
8 Hb_007765_070 0.2294992744 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]
9 Hb_001050_030 0.2300202709 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
10 Hb_007333_030 0.2315615071 - - -
11 Hb_001221_140 0.2323347869 - - DNA binding protein, putative [Ricinus communis]
12 Hb_048476_150 0.2324037625 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
13 Hb_004097_120 0.2382584183 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
14 Hb_003059_010 0.2392283903 - - PREDICTED: uncharacterized protein LOC104236538 [Nicotiana sylvestris]
15 Hb_000574_360 0.2417078787 - - PREDICTED: formamidopyrimidine-DNA glycosylase-like isoform X1 [Vitis vinifera]
16 Hb_005656_080 0.2443775397 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
17 Hb_003895_030 0.2458076508 - - -
18 Hb_028227_010 0.2463277969 - - PREDICTED: uncharacterized protein LOC105629489 [Jatropha curcas]
19 Hb_076233_030 0.2464540803 - - PREDICTED: phosphoserine phosphatase, chloroplastic [Jatropha curcas]
20 Hb_004449_240 0.247068792 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]

Gene co-expression network

sample Hb_102632_010 Hb_102632_010 Hb_000571_010 Hb_000571_010 Hb_102632_010--Hb_000571_010 Hb_000206_190 Hb_000206_190 Hb_102632_010--Hb_000206_190 Hb_002307_080 Hb_002307_080 Hb_102632_010--Hb_002307_080 Hb_000077_220 Hb_000077_220 Hb_102632_010--Hb_000077_220 Hb_010712_070 Hb_010712_070 Hb_102632_010--Hb_010712_070 Hb_002471_180 Hb_002471_180 Hb_102632_010--Hb_002471_180 Hb_007765_070 Hb_007765_070 Hb_000571_010--Hb_007765_070 Hb_000100_130 Hb_000100_130 Hb_000571_010--Hb_000100_130 Hb_000571_010--Hb_000206_190 Hb_048476_150 Hb_048476_150 Hb_000571_010--Hb_048476_150 Hb_000160_150 Hb_000160_150 Hb_000571_010--Hb_000160_150 Hb_071869_010 Hb_071869_010 Hb_000206_190--Hb_071869_010 Hb_001050_030 Hb_001050_030 Hb_000206_190--Hb_001050_030 Hb_135442_010 Hb_135442_010 Hb_000206_190--Hb_135442_010 Hb_002154_070 Hb_002154_070 Hb_000206_190--Hb_002154_070 Hb_002863_120 Hb_002863_120 Hb_000206_190--Hb_002863_120 Hb_006022_010 Hb_006022_010 Hb_002307_080--Hb_006022_010 Hb_054865_020 Hb_054865_020 Hb_002307_080--Hb_054865_020 Hb_000631_090 Hb_000631_090 Hb_002307_080--Hb_000631_090 Hb_052128_010 Hb_052128_010 Hb_002307_080--Hb_052128_010 Hb_000045_160 Hb_000045_160 Hb_002307_080--Hb_000045_160 Hb_002249_020 Hb_002249_020 Hb_002307_080--Hb_002249_020 Hb_001221_140 Hb_001221_140 Hb_000077_220--Hb_001221_140 Hb_002814_060 Hb_002814_060 Hb_000077_220--Hb_002814_060 Hb_143960_010 Hb_143960_010 Hb_000077_220--Hb_143960_010 Hb_000599_170 Hb_000599_170 Hb_000077_220--Hb_000599_170 Hb_001508_020 Hb_001508_020 Hb_000077_220--Hb_001508_020 Hb_000106_020 Hb_000106_020 Hb_000077_220--Hb_000106_020 Hb_000544_160 Hb_000544_160 Hb_010712_070--Hb_000544_160 Hb_078897_010 Hb_078897_010 Hb_010712_070--Hb_078897_010 Hb_002722_010 Hb_002722_010 Hb_010712_070--Hb_002722_010 Hb_000030_160 Hb_000030_160 Hb_010712_070--Hb_000030_160 Hb_010712_070--Hb_007765_070 Hb_002471_180--Hb_048476_150 Hb_000139_230 Hb_000139_230 Hb_002471_180--Hb_000139_230 Hb_001021_220 Hb_001021_220 Hb_002471_180--Hb_001021_220 Hb_098209_010 Hb_098209_010 Hb_002471_180--Hb_098209_010 Hb_002902_020 Hb_002902_020 Hb_002471_180--Hb_002902_020 Hb_000376_060 Hb_000376_060 Hb_002471_180--Hb_000376_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63778 5.5468 12.0233 4.6975 4.11511 12.9261
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 6.239 1.78938 4.75956

CAGE analysis