Hb_102772_010

Information

Type -
Description -
Location Contig102772: 985-1726
Sequence    

Annotation

kegg
ID rcu:RCOM_1431370
description hypothetical protein
nr
ID XP_002512367.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q84MC0
description Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1
trembl
ID B9RF48
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1431370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01136: 975-1851
cDNA
(Sanger)
(ID:Location)		 011_O02.ab1: 975-1840

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102772_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000622_120 0.0936932064 - - hypothetical protein [Hevea brasiliensis]
3 Hb_000622_190 0.1038949807 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]
4 Hb_000995_020 0.1206433559 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000622_230 0.1310933837 - - PREDICTED: uncharacterized protein LOC105642895 [Jatropha curcas]
6 Hb_000115_200 0.1315627018 - - PREDICTED: endonuclease 2 [Jatropha curcas]
7 Hb_001433_230 0.1336264306 - - PREDICTED: kinesin-4-like [Jatropha curcas]
8 Hb_177208_010 0.1384150175 transcription factor TF Family: MIKC MADS-box transcription factor, partial [Jatropha sp. CONN 198700232]
9 Hb_006816_060 0.1420912205 - - PREDICTED: phospholipid-metabolizing enzyme A-C1-like [Jatropha curcas]
10 Hb_005455_100 0.143295232 - - amino acid transporter, putative [Ricinus communis]
11 Hb_000521_060 0.1437522362 - - PREDICTED: protein YLS3-like [Jatropha curcas]
12 Hb_005357_170 0.145653479 - - Pectinesterase precursor, putative [Ricinus communis]
13 Hb_055276_010 0.1467699359 - - hypothetical protein POPTR_0003s02950g [Populus trichocarpa]
14 Hb_007311_050 0.1484787648 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003580_020 0.1489490921 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001216_060 0.1489535415 - - conserved hypothetical protein [Ricinus communis]
17 Hb_014834_100 0.1493336302 - - PREDICTED: probable aquaporin TIP-type [Gossypium raimondii]
18 Hb_003680_240 0.1506350836 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
19 Hb_017914_020 0.1525412694 - - -
20 Hb_009079_010 0.1540670444 - - JHL18I08.8 [Jatropha curcas]

Gene co-expression network

sample Hb_102772_010 Hb_102772_010 Hb_000622_120 Hb_000622_120 Hb_102772_010--Hb_000622_120 Hb_000622_190 Hb_000622_190 Hb_102772_010--Hb_000622_190 Hb_000995_020 Hb_000995_020 Hb_102772_010--Hb_000995_020 Hb_000622_230 Hb_000622_230 Hb_102772_010--Hb_000622_230 Hb_000115_200 Hb_000115_200 Hb_102772_010--Hb_000115_200 Hb_001433_230 Hb_001433_230 Hb_102772_010--Hb_001433_230 Hb_000622_120--Hb_000622_230 Hb_000622_120--Hb_000622_190 Hb_000622_120--Hb_000115_200 Hb_007574_040 Hb_007574_040 Hb_000622_120--Hb_007574_040 Hb_177208_010 Hb_177208_010 Hb_000622_120--Hb_177208_010 Hb_000608_090 Hb_000608_090 Hb_000622_190--Hb_000608_090 Hb_007311_050 Hb_007311_050 Hb_000622_190--Hb_007311_050 Hb_004586_440 Hb_004586_440 Hb_000622_190--Hb_004586_440 Hb_000362_030 Hb_000362_030 Hb_000622_190--Hb_000362_030 Hb_000995_020--Hb_000622_230 Hb_000995_020--Hb_000622_120 Hb_006816_060 Hb_006816_060 Hb_000995_020--Hb_006816_060 Hb_003371_030 Hb_003371_030 Hb_000995_020--Hb_003371_030 Hb_000617_300 Hb_000617_300 Hb_000995_020--Hb_000617_300 Hb_000106_010 Hb_000106_010 Hb_000622_230--Hb_000106_010 Hb_025193_010 Hb_025193_010 Hb_000622_230--Hb_025193_010 Hb_000622_230--Hb_177208_010 Hb_002263_050 Hb_002263_050 Hb_000622_230--Hb_002263_050 Hb_001584_270 Hb_001584_270 Hb_000115_200--Hb_001584_270 Hb_002014_130 Hb_002014_130 Hb_000115_200--Hb_002014_130 Hb_005291_020 Hb_005291_020 Hb_000115_200--Hb_005291_020 Hb_003580_020 Hb_003580_020 Hb_000115_200--Hb_003580_020 Hb_003055_100 Hb_003055_100 Hb_000115_200--Hb_003055_100 Hb_006717_060 Hb_006717_060 Hb_000115_200--Hb_006717_060 Hb_022250_140 Hb_022250_140 Hb_001433_230--Hb_022250_140 Hb_014834_100 Hb_014834_100 Hb_001433_230--Hb_014834_100 Hb_001433_230--Hb_006816_060 Hb_001634_050 Hb_001634_050 Hb_001433_230--Hb_001634_050 Hb_005357_170 Hb_005357_170 Hb_001433_230--Hb_005357_170 Hb_005396_020 Hb_005396_020 Hb_001433_230--Hb_005396_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0814748 0.511023 3.34094 31.5864 0 0.268537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.283257 0.519483 0.522555 0.333906 4.91747

CAGE analysis