Hb_102864_010

Information

Type -
Description -
Location Contig102864: 1448-5286
Sequence    

Annotation

kegg
ID pop:POPTR_0008s14250g
description POPTRDRAFT_564746; hypothetical protein
nr
ID XP_002311567.2
description hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HJP1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s14250g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01139: 4444-5371
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102864_010 0.0 - - hypothetical protein POPTR_0008s14250g [Populus trichocarpa]
2 Hb_030620_010 0.1025518076 - - -
3 Hb_004223_230 0.114893875 transcription factor TF Family: ARF PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
4 Hb_001804_040 0.1168355197 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001366_230 0.1169706852 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000340_430 0.1169788738 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_007451_030 0.1170146706 - - PREDICTED: mitochondrial thiamine pyrophosphate carrier isoform X1 [Jatropha curcas]
8 Hb_000856_340 0.1212774191 - - PREDICTED: uncharacterized protein LOC105640501 [Jatropha curcas]
9 Hb_001478_050 0.1213676966 - - PREDICTED: uncharacterized protein LOC105640307 [Jatropha curcas]
10 Hb_116349_150 0.1223250682 - - PREDICTED: microtubule-associated protein TORTIFOLIA1 [Jatropha curcas]
11 Hb_000313_380 0.1249170694 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001191_100 0.1261255245 - - F-actin capping protein beta subunit [Populus trichocarpa]
13 Hb_003752_110 0.1267670734 - - -
14 Hb_000329_690 0.1268079707 - - PREDICTED: uncharacterized protein LOC105643212 isoform X2 [Jatropha curcas]
15 Hb_000866_300 0.1285996734 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
16 Hb_009026_050 0.1288772846 - - vacuolar ATPase F subunit [Hevea brasiliensis]
17 Hb_000291_200 0.1301616057 - - -
18 Hb_000173_170 0.1313585411 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
19 Hb_000193_230 0.1313673037 - - PREDICTED: NEP1-interacting protein-like 2 isoform X1 [Jatropha curcas]
20 Hb_001754_150 0.1320626278 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]

Gene co-expression network

sample Hb_102864_010 Hb_102864_010 Hb_030620_010 Hb_030620_010 Hb_102864_010--Hb_030620_010 Hb_004223_230 Hb_004223_230 Hb_102864_010--Hb_004223_230 Hb_001804_040 Hb_001804_040 Hb_102864_010--Hb_001804_040 Hb_001366_230 Hb_001366_230 Hb_102864_010--Hb_001366_230 Hb_000340_430 Hb_000340_430 Hb_102864_010--Hb_000340_430 Hb_007451_030 Hb_007451_030 Hb_102864_010--Hb_007451_030 Hb_030620_010--Hb_004223_230 Hb_000329_690 Hb_000329_690 Hb_030620_010--Hb_000329_690 Hb_000117_040 Hb_000117_040 Hb_030620_010--Hb_000117_040 Hb_006452_060 Hb_006452_060 Hb_030620_010--Hb_006452_060 Hb_002200_110 Hb_002200_110 Hb_030620_010--Hb_002200_110 Hb_005031_070 Hb_005031_070 Hb_004223_230--Hb_005031_070 Hb_004295_020 Hb_004295_020 Hb_004223_230--Hb_004295_020 Hb_004223_230--Hb_000117_040 Hb_000313_380 Hb_000313_380 Hb_004223_230--Hb_000313_380 Hb_001951_110 Hb_001951_110 Hb_001804_040--Hb_001951_110 Hb_004204_030 Hb_004204_030 Hb_001804_040--Hb_004204_030 Hb_000866_300 Hb_000866_300 Hb_001804_040--Hb_000866_300 Hb_001754_150 Hb_001754_150 Hb_001804_040--Hb_001754_150 Hb_001019_090 Hb_001019_090 Hb_001804_040--Hb_001019_090 Hb_001804_040--Hb_001366_230 Hb_001191_100 Hb_001191_100 Hb_001366_230--Hb_001191_100 Hb_025087_010 Hb_025087_010 Hb_001366_230--Hb_025087_010 Hb_183963_020 Hb_183963_020 Hb_001366_230--Hb_183963_020 Hb_001366_230--Hb_000313_380 Hb_026988_020 Hb_026988_020 Hb_001366_230--Hb_026988_020 Hb_000599_090 Hb_000599_090 Hb_000340_430--Hb_000599_090 Hb_000340_430--Hb_001191_100 Hb_002307_090 Hb_002307_090 Hb_000340_430--Hb_002307_090 Hb_001488_100 Hb_001488_100 Hb_000340_430--Hb_001488_100 Hb_000111_280 Hb_000111_280 Hb_000340_430--Hb_000111_280 Hb_000193_230 Hb_000193_230 Hb_007451_030--Hb_000193_230 Hb_007451_030--Hb_001804_040 Hb_007625_020 Hb_007625_020 Hb_007451_030--Hb_007625_020 Hb_012305_060 Hb_012305_060 Hb_007451_030--Hb_012305_060 Hb_000680_150 Hb_000680_150 Hb_007451_030--Hb_000680_150 Hb_004545_160 Hb_004545_160 Hb_007451_030--Hb_004545_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8802 2.97605 1.04925 0.880112 18.3999 18.0387
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.3061 28.9784 18.8538 2.81672 3.29612

CAGE analysis