Hb_102900_010

Information

Type -
Description -
Location Contig102900: 121-1073
Sequence    

Annotation

kegg
ID rcu:RCOM_0206830
description S-locus-specific glycoprotein S6 precursor, putative (EC:2.7.11.25)
nr
ID XP_012070687.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
swissprot
ID O81833
description G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 OS=Arabidopsis thaliana GN=SD11 PE=1 SV=1
trembl
ID A0A067L392
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_00727 PE=3 SV=1
Gene Ontology
ID GO:0004674
description s-locus lectin protein kinase family

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102900_010 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
2 Hb_000751_010 0.0375665654 - - conserved hypothetical protein [Ricinus communis]
3 Hb_008165_010 0.0408693039 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
4 Hb_010737_030 0.0414556789 - - unnamed protein product [Vitis vinifera]
5 Hb_102129_040 0.0442941216 - - PREDICTED: PTI1-like tyrosine-protein kinase 2 isoform X1 [Jatropha curcas]
6 Hb_000436_110 0.0485341731 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
7 Hb_018663_010 0.057737954 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
8 Hb_000496_100 0.058227682 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
9 Hb_006586_060 0.0607537523 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
10 Hb_031862_190 0.0729827606 - - -
11 Hb_001329_060 0.0803608774 - - Polygalacturonase precursor, putative [Ricinus communis]
12 Hb_000160_260 0.081390486 - - nutrient reservoir, putative [Ricinus communis]
13 Hb_000735_190 0.0823052077 - - hypothetical protein POPTR_0006s19340g [Populus trichocarpa]
14 Hb_003411_070 0.0825623631 - - PREDICTED: protein NRT1/ PTR FAMILY 3.1 [Populus euphratica]
15 Hb_002235_260 0.0869793828 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
16 Hb_000028_010 0.0930793617 - - cytochrome P450, putative [Ricinus communis]
17 Hb_004117_060 0.0935416417 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
18 Hb_001221_550 0.0946149869 - - Corticosteroid 11-beta-dehydrogenase, putative [Ricinus communis]
19 Hb_000167_150 0.1003939772 - - hypothetical protein POPTR_0008s03590g [Populus trichocarpa]
20 Hb_000375_200 0.1006488209 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]

Gene co-expression network

sample Hb_102900_010 Hb_102900_010 Hb_000751_010 Hb_000751_010 Hb_102900_010--Hb_000751_010 Hb_008165_010 Hb_008165_010 Hb_102900_010--Hb_008165_010 Hb_010737_030 Hb_010737_030 Hb_102900_010--Hb_010737_030 Hb_102129_040 Hb_102129_040 Hb_102900_010--Hb_102129_040 Hb_000436_110 Hb_000436_110 Hb_102900_010--Hb_000436_110 Hb_018663_010 Hb_018663_010 Hb_102900_010--Hb_018663_010 Hb_000751_010--Hb_102129_040 Hb_006586_060 Hb_006586_060 Hb_000751_010--Hb_006586_060 Hb_031862_190 Hb_031862_190 Hb_000751_010--Hb_031862_190 Hb_001329_060 Hb_001329_060 Hb_000751_010--Hb_001329_060 Hb_003411_070 Hb_003411_070 Hb_000751_010--Hb_003411_070 Hb_008165_010--Hb_000436_110 Hb_008165_010--Hb_018663_010 Hb_008165_010--Hb_010737_030 Hb_002235_260 Hb_002235_260 Hb_008165_010--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_008165_010--Hb_004117_060 Hb_000496_100 Hb_000496_100 Hb_010737_030--Hb_000496_100 Hb_010737_030--Hb_018663_010 Hb_010737_030--Hb_000436_110 Hb_000375_200 Hb_000375_200 Hb_010737_030--Hb_000375_200 Hb_102129_040--Hb_006586_060 Hb_102129_040--Hb_001329_060 Hb_000735_190 Hb_000735_190 Hb_102129_040--Hb_000735_190 Hb_000167_150 Hb_000167_150 Hb_102129_040--Hb_000167_150 Hb_000436_110--Hb_018663_010 Hb_000436_110--Hb_000751_010 Hb_003226_040 Hb_003226_040 Hb_000436_110--Hb_003226_040 Hb_018663_010--Hb_000375_200 Hb_018663_010--Hb_000496_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.894924 0.168354 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.173073

CAGE analysis