Hb_102933_010

Information

Type -
Description -
Location Contig102933: 1193-1845
Sequence    

Annotation

kegg
ID rcu:RCOM_1083020
description Pectate lyase precursor, putative (EC:4.2.2.2)
nr
ID XP_002515037.1
description Pectate lyase precursor, putative [Ricinus communis]
swissprot
ID Q9FXD8
description Probable pectate lyase 5 OS=Arabidopsis thaliana GN=At1g67750 PE=2 SV=2
trembl
ID B9RMR8
description Pectate lyase OS=Ricinus communis GN=RCOM_1083020 PE=3 SV=1
Gene Ontology
ID GO:0030570
description pectate lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01161: 1176-1312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102933_010 0.0 - - Pectate lyase precursor, putative [Ricinus communis]
2 Hb_000152_690 0.0051705981 - - PREDICTED: uncharacterized protein LOC105648869 [Jatropha curcas]
3 Hb_003792_010 0.005484145 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002254_020 0.0072325327 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 2 protein-like [Jatropha curcas]
5 Hb_010543_010 0.0079222738 - - Phospholipid-transporting ATPase, putative [Ricinus communis]
6 Hb_001946_090 0.0089652105 - - -
7 Hb_001377_140 0.0097038089 - - hypothetical protein MIMGU_mgv1a016697mg [Erythranthe guttata]
8 Hb_005065_090 0.0140306364 - - zinc/iron transporter, putative [Ricinus communis]
9 Hb_000760_090 0.0142719028 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-6 [Vitis vinifera]
10 Hb_001488_170 0.0177242319 - - PREDICTED: transcription initiation factor IIB-like [Jatropha curcas]
11 Hb_003531_110 0.0187375399 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
12 Hb_001645_080 0.0197222621 transcription factor TF Family: C2H2 palmate-like pentafoliata 1 transcription factor [Manihot esculenta]
13 Hb_000140_010 0.0200766136 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
14 Hb_005663_020 0.0202507142 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
15 Hb_000053_140 0.0243264129 - - conserved hypothetical protein [Ricinus communis]
16 Hb_009225_030 0.0261284157 - - ring finger protein, putative [Ricinus communis]
17 Hb_104011_010 0.0267503286 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
18 Hb_185246_010 0.0286495146 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
19 Hb_121058_010 0.0287049807 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001456_010 0.030368606 - - o-methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_102933_010 Hb_102933_010 Hb_000152_690 Hb_000152_690 Hb_102933_010--Hb_000152_690 Hb_003792_010 Hb_003792_010 Hb_102933_010--Hb_003792_010 Hb_002254_020 Hb_002254_020 Hb_102933_010--Hb_002254_020 Hb_010543_010 Hb_010543_010 Hb_102933_010--Hb_010543_010 Hb_001946_090 Hb_001946_090 Hb_102933_010--Hb_001946_090 Hb_001377_140 Hb_001377_140 Hb_102933_010--Hb_001377_140 Hb_000152_690--Hb_010543_010 Hb_000152_690--Hb_001946_090 Hb_005065_090 Hb_005065_090 Hb_000152_690--Hb_005065_090 Hb_000760_090 Hb_000760_090 Hb_000152_690--Hb_000760_090 Hb_000152_690--Hb_003792_010 Hb_003792_010--Hb_002254_020 Hb_003792_010--Hb_001377_140 Hb_003531_110 Hb_003531_110 Hb_003792_010--Hb_003531_110 Hb_003792_010--Hb_010543_010 Hb_002254_020--Hb_001377_140 Hb_002254_020--Hb_003531_110 Hb_002254_020--Hb_000152_690 Hb_000140_010 Hb_000140_010 Hb_002254_020--Hb_000140_010 Hb_010543_010--Hb_001946_090 Hb_010543_010--Hb_005065_090 Hb_010543_010--Hb_000760_090 Hb_001488_170 Hb_001488_170 Hb_010543_010--Hb_001488_170 Hb_001946_090--Hb_005065_090 Hb_001946_090--Hb_000760_090 Hb_001946_090--Hb_001488_170 Hb_001377_140--Hb_003531_110 Hb_001377_140--Hb_000140_010 Hb_001377_140--Hb_000152_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2.40881 2.20855 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis