Hb_102948_010

Information

Type transcription factor
Description TF Family: ARID
Location Contig102948: 2042-2920
Sequence    

Annotation

kegg
ID rcu:RCOM_1602230
description transcription factor, putative
nr
ID XP_012073561.1
description PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
swissprot
ID Q0WNR6
description AT-rich interactive domain-containing protein 5 OS=Arabidopsis thaliana GN=ARID5 PE=1 SV=1
trembl
ID A0A067KKJ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08027 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_102948_010 0.0 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]
2 Hb_002218_020 0.0391636209 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
3 Hb_001430_020 0.0410293425 - - Actin-like ATPase superfamily protein isoform 1 [Theobroma cacao]
4 Hb_087313_010 0.0681891952 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005235_070 0.0742386634 - - PREDICTED: plastid lipid-associated protein 3, chloroplastic [Jatropha curcas]
6 Hb_012438_030 0.0754126105 - - PREDICTED: protein sym-1 [Jatropha curcas]
7 Hb_000555_020 0.0805669436 - - APO protein 2, chloroplast precursor, putative [Ricinus communis]
8 Hb_000003_680 0.0827784186 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
9 Hb_001409_060 0.0841683402 transcription factor TF Family: TRAF Regulatory protein NPR1, putative [Ricinus communis]
10 Hb_000788_030 0.0854847736 - - PREDICTED: dynamin-2A [Jatropha curcas]
11 Hb_000663_020 0.086352258 - - PREDICTED: alternative NAD(P)H-ubiquinone oxidoreductase C1, chloroplastic/mitochondrial isoform X1 [Jatropha curcas]
12 Hb_003883_010 0.088074434 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
13 Hb_002631_240 0.0882675572 - - JHL17M24.3 [Jatropha curcas]
14 Hb_002876_300 0.0905784689 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
15 Hb_000107_340 0.0906362205 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105637652 [Jatropha curcas]
16 Hb_009847_030 0.0912255418 - - zinc finger family protein [Populus trichocarpa]
17 Hb_000802_130 0.0927624916 - - hypothetical protein JCGZ_04636 [Jatropha curcas]
18 Hb_000291_180 0.092848987 - - PREDICTED: meiotically up-regulated gene 185 protein [Jatropha curcas]
19 Hb_000035_090 0.0934587949 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
20 Hb_000663_080 0.0945457428 transcription factor TF Family: HB Homeobox protein HAT3.1, putative [Ricinus communis]

Gene co-expression network

sample Hb_102948_010 Hb_102948_010 Hb_002218_020 Hb_002218_020 Hb_102948_010--Hb_002218_020 Hb_001430_020 Hb_001430_020 Hb_102948_010--Hb_001430_020 Hb_087313_010 Hb_087313_010 Hb_102948_010--Hb_087313_010 Hb_005235_070 Hb_005235_070 Hb_102948_010--Hb_005235_070 Hb_012438_030 Hb_012438_030 Hb_102948_010--Hb_012438_030 Hb_000555_020 Hb_000555_020 Hb_102948_010--Hb_000555_020 Hb_002218_020--Hb_001430_020 Hb_002218_020--Hb_012438_030 Hb_002218_020--Hb_087313_010 Hb_000663_020 Hb_000663_020 Hb_002218_020--Hb_000663_020 Hb_003883_010 Hb_003883_010 Hb_002218_020--Hb_003883_010 Hb_000802_130 Hb_000802_130 Hb_001430_020--Hb_000802_130 Hb_001430_020--Hb_003883_010 Hb_001430_020--Hb_005235_070 Hb_001430_020--Hb_000555_020 Hb_087313_010--Hb_012438_030 Hb_001703_040 Hb_001703_040 Hb_087313_010--Hb_001703_040 Hb_000788_030 Hb_000788_030 Hb_087313_010--Hb_000788_030 Hb_004324_360 Hb_004324_360 Hb_087313_010--Hb_004324_360 Hb_005235_070--Hb_000555_020 Hb_005235_070--Hb_003883_010 Hb_000107_340 Hb_000107_340 Hb_005235_070--Hb_000107_340 Hb_005235_070--Hb_002218_020 Hb_002107_050 Hb_002107_050 Hb_005235_070--Hb_002107_050 Hb_012438_030--Hb_001703_040 Hb_000163_260 Hb_000163_260 Hb_012438_030--Hb_000163_260 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_000555_020--Hb_000107_340 Hb_002150_140 Hb_002150_140 Hb_000555_020--Hb_002150_140 Hb_114310_070 Hb_114310_070 Hb_000555_020--Hb_114310_070 Hb_000311_120 Hb_000311_120 Hb_000555_020--Hb_000311_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3278 21.1377 40.4709 18.4823 11.2687 11.5354
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.7386 11.8954 10.3848 8.21799 31.3437

CAGE analysis