Hb_103000_010

Information

Type -
Description -
Location Contig103000: 1589-2056
Sequence    

Annotation

kegg
ID pop:POPTR_0007s02210g
description hypothetical protein
nr
ID XP_006380299.1
description hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5G755
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s02210g PE=3 SV=1
Gene Ontology
ID GO:0016772
description probable receptor-like protein kinase at1g67000

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103000_010 0.0 - - hypothetical protein POPTR_0007s02210g [Populus trichocarpa]
2 Hb_004652_040 0.0134173743 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
3 Hb_003337_010 0.0178341121 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002014_120 0.0237697241 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
5 Hb_179367_010 0.0320292968 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
6 Hb_000174_130 0.0345707947 - - flowering locus T-like protein [Fagus crenata]
7 Hb_166700_010 0.0465672528 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
8 Hb_104362_020 0.0500694135 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_009838_030 0.0514891767 - - Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
10 Hb_001948_100 0.0523620911 - - conserved hypothetical protein [Ricinus communis]
11 Hb_010261_050 0.0568629952 - - DNA binding protein, putative [Ricinus communis]
12 Hb_151027_010 0.0630325377 - - (+)-delta-cadinene synthase isozyme A, putative [Ricinus communis]
13 Hb_000352_020 0.0708901554 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor LEP [Jatropha curcas]
14 Hb_003442_020 0.0768450142 - - ccd1, putative [Ricinus communis]
15 Hb_000152_090 0.0854442146 - - unnamed protein product [Coffea canephora]
16 Hb_001006_130 0.0944307315 - - PREDICTED: transcription factor bHLH111 [Jatropha curcas]
17 Hb_007125_020 0.1002414825 - - hypothetical protein POPTR_0003s18010g [Populus trichocarpa]
18 Hb_003073_060 0.105311917 - - -
19 Hb_174829_030 0.1087436635 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003777_100 0.1107715309 - - Auxin-induced protein 5NG4, putative [Ricinus communis]

Gene co-expression network

sample Hb_103000_010 Hb_103000_010 Hb_004652_040 Hb_004652_040 Hb_103000_010--Hb_004652_040 Hb_003337_010 Hb_003337_010 Hb_103000_010--Hb_003337_010 Hb_002014_120 Hb_002014_120 Hb_103000_010--Hb_002014_120 Hb_179367_010 Hb_179367_010 Hb_103000_010--Hb_179367_010 Hb_000174_130 Hb_000174_130 Hb_103000_010--Hb_000174_130 Hb_166700_010 Hb_166700_010 Hb_103000_010--Hb_166700_010 Hb_004652_040--Hb_002014_120 Hb_004652_040--Hb_003337_010 Hb_004652_040--Hb_179367_010 Hb_009838_030 Hb_009838_030 Hb_004652_040--Hb_009838_030 Hb_004652_040--Hb_000174_130 Hb_003337_010--Hb_002014_120 Hb_001948_100 Hb_001948_100 Hb_003337_010--Hb_001948_100 Hb_003337_010--Hb_179367_010 Hb_003337_010--Hb_009838_030 Hb_002014_120--Hb_179367_010 Hb_002014_120--Hb_009838_030 Hb_002014_120--Hb_001948_100 Hb_104362_020 Hb_104362_020 Hb_179367_010--Hb_104362_020 Hb_179367_010--Hb_000174_130 Hb_151027_010 Hb_151027_010 Hb_179367_010--Hb_151027_010 Hb_000174_130--Hb_166700_010 Hb_000174_130--Hb_151027_010 Hb_000174_130--Hb_104362_020 Hb_166700_010--Hb_151027_010 Hb_166700_010--Hb_179367_010 Hb_166700_010--Hb_104362_020 Hb_166700_010--Hb_004652_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.37845 0.23636 1.57505 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis