Hb_103012_010

Information

Type -
Description -
Location Contig103012: 3151-4137
Sequence    

Annotation

kegg
ID rcu:RCOM_1032830
description hypothetical protein
nr
ID XP_012078156.1
description PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KCN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12035 PE=4 SV=1
Gene Ontology
ID GO:0008270
description forkhead box protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01259: 2856-4163
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103012_010 0.0 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
2 Hb_001946_010 0.0374304685 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
3 Hb_000260_170 0.0508867647 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
4 Hb_000538_100 0.0601916467 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007317_110 0.0615038726 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
6 Hb_011930_160 0.061675992 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
7 Hb_002783_240 0.0618123127 - - PREDICTED: putative ER lumen protein-retaining receptor C28H8.4 [Jatropha curcas]
8 Hb_003813_130 0.0641983333 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
9 Hb_040262_010 0.0646924447 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
10 Hb_006827_020 0.0650466692 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000193_190 0.0655608843 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
12 Hb_007059_010 0.065843335 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
13 Hb_001488_410 0.0682823019 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
14 Hb_004881_020 0.0688760488 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
15 Hb_020719_030 0.0693073274 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
16 Hb_006252_040 0.0698579508 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
17 Hb_005211_100 0.0719509044 - - PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform [Jatropha curcas]
18 Hb_003025_110 0.0720182015 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
19 Hb_033834_060 0.0724160302 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
20 Hb_007576_110 0.0730560411 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]

Gene co-expression network

sample Hb_103012_010 Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_103012_010--Hb_001946_010 Hb_000260_170 Hb_000260_170 Hb_103012_010--Hb_000260_170 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240 Hb_001946_010--Hb_000260_170 Hb_001946_010--Hb_011930_160 Hb_000193_190 Hb_000193_190 Hb_001946_010--Hb_000193_190 Hb_003025_110 Hb_003025_110 Hb_001946_010--Hb_003025_110 Hb_000205_100 Hb_000205_100 Hb_001946_010--Hb_000205_100 Hb_004117_130 Hb_004117_130 Hb_000260_170--Hb_004117_130 Hb_020719_030 Hb_020719_030 Hb_000260_170--Hb_020719_030 Hb_040262_010 Hb_040262_010 Hb_000260_170--Hb_040262_010 Hb_002671_100 Hb_002671_100 Hb_000260_170--Hb_002671_100 Hb_006827_020 Hb_006827_020 Hb_000538_100--Hb_006827_020 Hb_000538_100--Hb_007317_110 Hb_006252_040 Hb_006252_040 Hb_000538_100--Hb_006252_040 Hb_002304_090 Hb_002304_090 Hb_000538_100--Hb_002304_090 Hb_003952_070 Hb_003952_070 Hb_000538_100--Hb_003952_070 Hb_007317_110--Hb_006827_020 Hb_000085_160 Hb_000085_160 Hb_007317_110--Hb_000085_160 Hb_003665_060 Hb_003665_060 Hb_007317_110--Hb_003665_060 Hb_000808_270 Hb_000808_270 Hb_007317_110--Hb_000808_270 Hb_003964_070 Hb_003964_070 Hb_007317_110--Hb_003964_070 Hb_007059_010 Hb_007059_010 Hb_007317_110--Hb_007059_010 Hb_003163_020 Hb_003163_020 Hb_011930_160--Hb_003163_020 Hb_004619_030 Hb_004619_030 Hb_011930_160--Hb_004619_030 Hb_011930_160--Hb_003025_110 Hb_011930_160--Hb_000193_190 Hb_002783_240--Hb_007059_010 Hb_005211_100 Hb_005211_100 Hb_002783_240--Hb_005211_100 Hb_002783_240--Hb_040262_010 Hb_002783_240--Hb_001946_010 Hb_000345_240 Hb_000345_240 Hb_002783_240--Hb_000345_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.8597 8.67485 9.62572 12.5509 18.859 20.8987
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.041 9.56084 9.90891 13.3635 7.36913

CAGE analysis