Hb_103093_010

Information

Type -
Description -
Location Contig103093: 378-572
Sequence    

Annotation

kegg
ID cmo:103485360
description protein kinase APK1A, chloroplastic-like
nr
ID XP_010906678.1
description PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
swissprot
ID Q9LSR9
description L-type lectin-domain containing receptor kinase I.8 OS=Arabidopsis thaliana GN=LECRK18 PE=2 SV=1
trembl
ID A0A067LER0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07983 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103093_010 0.0 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
2 Hb_094132_010 0.1409776234 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
3 Hb_000193_030 0.1599948425 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
4 Hb_000340_330 0.1621749151 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6 [Jatropha curcas]
5 Hb_000130_170 0.1627039349 - - -
6 Hb_021943_070 0.1766951469 - - -
7 Hb_005723_070 0.1794089977 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
8 Hb_002450_130 0.1807057058 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
9 Hb_008096_020 0.1906616716 - - -
10 Hb_000671_040 0.201185596 - - -
11 Hb_002972_060 0.2040504665 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_163132_010 0.2082783803 - - -
13 Hb_007356_010 0.2098105194 - - CTV.19 [Citrus trifoliata]
14 Hb_007290_020 0.2118411628 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
15 Hb_068804_060 0.2118991313 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
16 Hb_000300_140 0.2142331989 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_005318_010 0.2148380629 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
18 Hb_020532_010 0.2153358043 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
19 Hb_079978_010 0.2187774338 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
20 Hb_002204_040 0.2219041938 - - hypothetical protein B456_008G181200 [Gossypium raimondii]

Gene co-expression network

sample Hb_103093_010 Hb_103093_010 Hb_094132_010 Hb_094132_010 Hb_103093_010--Hb_094132_010 Hb_000193_030 Hb_000193_030 Hb_103093_010--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_103093_010--Hb_000340_330 Hb_000130_170 Hb_000130_170 Hb_103093_010--Hb_000130_170 Hb_021943_070 Hb_021943_070 Hb_103093_010--Hb_021943_070 Hb_005723_070 Hb_005723_070 Hb_103093_010--Hb_005723_070 Hb_094132_010--Hb_000193_030 Hb_163132_010 Hb_163132_010 Hb_094132_010--Hb_163132_010 Hb_000671_040 Hb_000671_040 Hb_094132_010--Hb_000671_040 Hb_007356_010 Hb_007356_010 Hb_094132_010--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_094132_010--Hb_007290_020 Hb_000193_030--Hb_163132_010 Hb_000193_030--Hb_007356_010 Hb_000193_030--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000193_030--Hb_068804_060 Hb_000340_330--Hb_000130_170 Hb_002450_130 Hb_002450_130 Hb_000340_330--Hb_002450_130 Hb_000683_090 Hb_000683_090 Hb_000340_330--Hb_000683_090 Hb_000340_330--Hb_005723_070 Hb_005318_020 Hb_005318_020 Hb_000340_330--Hb_005318_020 Hb_000130_170--Hb_005723_070 Hb_000130_170--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_000130_170--Hb_000876_010 Hb_005318_010 Hb_005318_010 Hb_000130_170--Hb_005318_010 Hb_008096_020 Hb_008096_020 Hb_021943_070--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_021943_070--Hb_002972_060 Hb_001089_080 Hb_001089_080 Hb_021943_070--Hb_001089_080 Hb_000084_130 Hb_000084_130 Hb_021943_070--Hb_000084_130 Hb_002732_020 Hb_002732_020 Hb_021943_070--Hb_002732_020 Hb_005723_070--Hb_000876_010 Hb_005723_070--Hb_002972_060 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.05781 1.66448 0 125.114 1.06847 257.333
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 5.7226 15.3644 4.36343

CAGE analysis