Hb_103149_010

Information

Type -
Description -
Location Contig103149: 215-618
Sequence    

Annotation

kegg
ID cic:CICLE_v100041742m
description hypothetical protein
nr
ID KDO38309.1
description hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
swissprot
ID Q9SSN3
description Toll/interleukin-1 receptor-like protein OS=Arabidopsis thaliana GN=TIR PE=1 SV=1
trembl
ID A0A067D5Q8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0397312mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein suppressor of npr1- constitutive 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103149_010 0.0 - - hypothetical protein CISIN_1g0397312mg, partial [Citrus sinensis]
2 Hb_000604_050 0.1083083797 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
3 Hb_000733_090 0.1163170693 - - PREDICTED: putative lipid-transfer protein DIR1 [Jatropha curcas]
4 Hb_000702_040 0.1275104893 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
5 Hb_004586_230 0.1282804896 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001016_040 0.1346371885 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
7 Hb_003939_090 0.1346973462 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
8 Hb_000270_530 0.1376975044 - - hypothetical protein POPTR_0015s08220g [Populus trichocarpa]
9 Hb_015884_010 0.1398872371 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930 isoform X1 [Jatropha curcas]
10 Hb_005687_060 0.14049896 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X1 [Jatropha curcas]
11 Hb_000567_220 0.1429153741 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
12 Hb_000369_050 0.147473914 - - Ankyrin repeat family protein, putative [Theobroma cacao]
13 Hb_001195_650 0.1479504207 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
14 Hb_001610_050 0.1501963247 - - PREDICTED: subtilisin-like protease-like [Solanum tuberosum]
15 Hb_000692_230 0.1522380638 - - phospholipase d delta, putative [Ricinus communis]
16 Hb_003906_150 0.152991231 - - peptidoglycan-binding LysM domain-containing family protein, partial [Populus trichocarpa]
17 Hb_006890_050 0.1569131863 transcription factor TF Family: TCP PREDICTED: transcription factor CYCLOIDEA [Jatropha curcas]
18 Hb_007075_020 0.1570130438 transcription factor TF Family: TRAF ankyrin repeat family protein [Populus trichocarpa]
19 Hb_049915_010 0.1585079331 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
20 Hb_035006_010 0.1587824185 - - hypothetical protein POPTR_0017s11350g [Populus trichocarpa]

Gene co-expression network

sample Hb_103149_010 Hb_103149_010 Hb_000604_050 Hb_000604_050 Hb_103149_010--Hb_000604_050 Hb_000733_090 Hb_000733_090 Hb_103149_010--Hb_000733_090 Hb_000702_040 Hb_000702_040 Hb_103149_010--Hb_000702_040 Hb_004586_230 Hb_004586_230 Hb_103149_010--Hb_004586_230 Hb_001016_040 Hb_001016_040 Hb_103149_010--Hb_001016_040 Hb_003939_090 Hb_003939_090 Hb_103149_010--Hb_003939_090 Hb_003906_150 Hb_003906_150 Hb_000604_050--Hb_003906_150 Hb_000270_530 Hb_000270_530 Hb_000604_050--Hb_000270_530 Hb_003529_010 Hb_003529_010 Hb_000604_050--Hb_003529_010 Hb_004007_190 Hb_004007_190 Hb_000604_050--Hb_004007_190 Hb_008566_070 Hb_008566_070 Hb_000604_050--Hb_008566_070 Hb_049915_010 Hb_049915_010 Hb_000733_090--Hb_049915_010 Hb_003952_080 Hb_003952_080 Hb_000733_090--Hb_003952_080 Hb_000692_230 Hb_000692_230 Hb_000733_090--Hb_000692_230 Hb_000733_090--Hb_000604_050 Hb_008406_030 Hb_008406_030 Hb_000733_090--Hb_008406_030 Hb_001610_050 Hb_001610_050 Hb_000702_040--Hb_001610_050 Hb_000702_040--Hb_004586_230 Hb_001587_220 Hb_001587_220 Hb_000702_040--Hb_001587_220 Hb_002639_120 Hb_002639_120 Hb_000702_040--Hb_002639_120 Hb_006890_050 Hb_006890_050 Hb_000702_040--Hb_006890_050 Hb_005892_010 Hb_005892_010 Hb_000702_040--Hb_005892_010 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650 Hb_015884_010 Hb_015884_010 Hb_001016_040--Hb_015884_010 Hb_186495_010 Hb_186495_010 Hb_001016_040--Hb_186495_010 Hb_009476_160 Hb_009476_160 Hb_001016_040--Hb_009476_160 Hb_005396_030 Hb_005396_030 Hb_001016_040--Hb_005396_030 Hb_000732_100 Hb_000732_100 Hb_001016_040--Hb_000732_100 Hb_003939_090--Hb_015884_010 Hb_007313_050 Hb_007313_050 Hb_003939_090--Hb_007313_050 Hb_010642_010 Hb_010642_010 Hb_003939_090--Hb_010642_010 Hb_003939_090--Hb_000702_040 Hb_035006_010 Hb_035006_010 Hb_003939_090--Hb_035006_010 Hb_021443_020 Hb_021443_020 Hb_003939_090--Hb_021443_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.708489 18.9985 2.70331 27.5901 0.319495 0.307999
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.383959 0 0.427903 3.09264 2.32177

CAGE analysis