Hb_103351_010

Information

Type -
Description -
Location Contig103351: 346-1196
Sequence    

Annotation

kegg
ID pop:POPTR_0002s01570g
description POPTRDRAFT_798380; hypothetical protein
nr
ID XP_002301935.2
description hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
swissprot
ID Q8LFG1
description Probable alpha-amylase 2 OS=Arabidopsis thaliana GN=AMY2 PE=2 SV=1
trembl
ID B9GQ54
description Alpha-amylase OS=Populus trichocarpa GN=POPTR_0002s01570g PE=3 SV=2
Gene Ontology
ID GO:0005576
description probable alpha-amylase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103351_010 0.0 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
2 Hb_124587_010 0.1036994221 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
3 Hb_000117_020 0.1119835926 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
4 Hb_002253_110 0.1469476522 - - cysteine desulfurylase, putative [Ricinus communis]
5 Hb_074961_010 0.1802645887 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
6 Hb_000117_010 0.1808858395 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
7 Hb_000707_070 0.187911958 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
8 Hb_121236_010 0.2010238066 - - geranyl-diphosphate synthase [Hevea brasiliensis]
9 Hb_003813_100 0.20400602 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
10 Hb_001722_020 0.2072999071 - - -
11 Hb_088774_010 0.2078822425 - - -
12 Hb_001513_020 0.2116706022 - - PREDICTED: methionine aminopeptidase 1A isoform X1 [Jatropha curcas]
13 Hb_027445_060 0.2163223702 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
14 Hb_000059_090 0.219025708 - - -
15 Hb_001668_030 0.2198881643 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006198_050 0.220282276 - - protein with unknown function [Ricinus communis]
17 Hb_003360_020 0.222193103 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
18 Hb_001252_170 0.2241335689 desease resistance Gene Name: Exostosin hypothetical protein PRUPE_ppa001357mg [Prunus persica]
19 Hb_000033_060 0.2243464658 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
20 Hb_006455_080 0.2246295281 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]

Gene co-expression network

sample Hb_103351_010 Hb_103351_010 Hb_124587_010 Hb_124587_010 Hb_103351_010--Hb_124587_010 Hb_000117_020 Hb_000117_020 Hb_103351_010--Hb_000117_020 Hb_002253_110 Hb_002253_110 Hb_103351_010--Hb_002253_110 Hb_074961_010 Hb_074961_010 Hb_103351_010--Hb_074961_010 Hb_000117_010 Hb_000117_010 Hb_103351_010--Hb_000117_010 Hb_000707_070 Hb_000707_070 Hb_103351_010--Hb_000707_070 Hb_124587_010--Hb_000117_020 Hb_124587_010--Hb_074961_010 Hb_124587_010--Hb_000117_010 Hb_124587_010--Hb_002253_110 Hb_121236_010 Hb_121236_010 Hb_124587_010--Hb_121236_010 Hb_000117_020--Hb_074961_010 Hb_000117_020--Hb_000117_010 Hb_000117_020--Hb_002253_110 Hb_000117_020--Hb_000707_070 Hb_003360_020 Hb_003360_020 Hb_002253_110--Hb_003360_020 Hb_002769_040 Hb_002769_040 Hb_002253_110--Hb_002769_040 Hb_000856_100 Hb_000856_100 Hb_002253_110--Hb_000856_100 Hb_000033_060 Hb_000033_060 Hb_002253_110--Hb_000033_060 Hb_009193_130 Hb_009193_130 Hb_002253_110--Hb_009193_130 Hb_074961_010--Hb_000117_010 Hb_074961_010--Hb_002253_110 Hb_074961_010--Hb_000033_060 Hb_000878_040 Hb_000878_040 Hb_074961_010--Hb_000878_040 Hb_023327_030 Hb_023327_030 Hb_074961_010--Hb_023327_030 Hb_005271_150 Hb_005271_150 Hb_000117_010--Hb_005271_150 Hb_073339_010 Hb_073339_010 Hb_000117_010--Hb_073339_010 Hb_000117_010--Hb_023327_030 Hb_000707_070--Hb_124587_010 Hb_126838_020 Hb_126838_020 Hb_000707_070--Hb_126838_020 Hb_000295_090 Hb_000295_090 Hb_000707_070--Hb_000295_090 Hb_000059_090 Hb_000059_090 Hb_000707_070--Hb_000059_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
304.399 5.11626 0.922147 39.4288 236.823 1243.99
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
202.737 44.0992 153.026 20.7967 6.23477

CAGE analysis