Hb_103452_010

Information

Type -
Description -
Location Contig103452: 454-3987
Sequence    

Annotation

kegg
ID cmo:103485923
description uncharacterized LOC103485923
nr
ID CAN75041.1
description hypothetical protein VITISV_027174 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_027174

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103452_010 0.0 - - hypothetical protein VITISV_027174 [Vitis vinifera]
2 Hb_005356_030 0.0135456782 - - protein binding protein, putative [Ricinus communis]
3 Hb_135673_010 0.0145875702 - - Germin-like protein subfamily 1 member 6 precursor [Populus trichocarpa]
4 Hb_001006_050 0.0181079962 - - PREDICTED: uncharacterized protein LOC101777526 [Setaria italica]
5 Hb_004116_090 0.0554841781 - - -
6 Hb_151094_020 0.0707839098 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Prunus mume]
7 Hb_000002_150 0.1139778211 - - conserved hypothetical protein [Ricinus communis]
8 Hb_147060_010 0.1198230272 - - PREDICTED: probable glutathione S-transferase parC [Populus euphratica]
9 Hb_010812_130 0.1212272088 - - PREDICTED: hydroxyacylglutathione hydrolase cytoplasmic [Jatropha curcas]
10 Hb_002498_290 0.1233745309 - - PREDICTED: autophagy-related protein 8C-like isoform X2 [Elaeis guineensis]
11 Hb_000438_030 0.1237776287 - - -
12 Hb_003858_050 0.1276670503 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
13 Hb_003020_340 0.1319820565 - - PREDICTED: uncharacterized protein LOC105631327 [Jatropha curcas]
14 Hb_030736_030 0.1353479128 - - hypothetical protein VITISV_006651 [Vitis vinifera]
15 Hb_160814_010 0.1389912605 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
16 Hb_046615_040 0.1390923404 - - unnamed protein product [Vitis vinifera]
17 Hb_000679_280 0.1437193858 - - hypothetical protein POPTR_0006s27120g [Populus trichocarpa]
18 Hb_002559_010 0.152764305 - - hypothetical protein JCGZ_06274 [Jatropha curcas]
19 Hb_003010_050 0.1574408118 - - -
20 Hb_001862_160 0.1575603199 - - PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.1 [Jatropha curcas]

Gene co-expression network

sample Hb_103452_010 Hb_103452_010 Hb_005356_030 Hb_005356_030 Hb_103452_010--Hb_005356_030 Hb_135673_010 Hb_135673_010 Hb_103452_010--Hb_135673_010 Hb_001006_050 Hb_001006_050 Hb_103452_010--Hb_001006_050 Hb_004116_090 Hb_004116_090 Hb_103452_010--Hb_004116_090 Hb_151094_020 Hb_151094_020 Hb_103452_010--Hb_151094_020 Hb_000002_150 Hb_000002_150 Hb_103452_010--Hb_000002_150 Hb_005356_030--Hb_135673_010 Hb_005356_030--Hb_001006_050 Hb_005356_030--Hb_004116_090 Hb_005356_030--Hb_151094_020 Hb_005356_030--Hb_000002_150 Hb_135673_010--Hb_001006_050 Hb_135673_010--Hb_004116_090 Hb_135673_010--Hb_151094_020 Hb_002498_290 Hb_002498_290 Hb_135673_010--Hb_002498_290 Hb_001006_050--Hb_151094_020 Hb_001006_050--Hb_004116_090 Hb_147060_010 Hb_147060_010 Hb_001006_050--Hb_147060_010 Hb_003858_050 Hb_003858_050 Hb_004116_090--Hb_003858_050 Hb_004116_090--Hb_151094_020 Hb_151094_020--Hb_147060_010 Hb_010812_130 Hb_010812_130 Hb_151094_020--Hb_010812_130 Hb_000438_030 Hb_000438_030 Hb_151094_020--Hb_000438_030 Hb_003020_340 Hb_003020_340 Hb_000002_150--Hb_003020_340 Hb_160814_010 Hb_160814_010 Hb_000002_150--Hb_160814_010 Hb_000147_010 Hb_000147_010 Hb_000002_150--Hb_000147_010 Hb_000925_120 Hb_000925_120 Hb_000002_150--Hb_000925_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00584632 0.00553103 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00559677 0

CAGE analysis