Hb_103688_010

Information

Type -
Description -
Location Contig103688: 39800-46544
Sequence    

Annotation

kegg
ID pop:POPTR_0008s01390g
description POPTRDRAFT_803094; hypothetical protein
nr
ID XP_012084488.1
description PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
swissprot
ID Q5IH14
description Sucrose-phosphatase 1 OS=Nicotiana tabacum GN=SPP1 PE=2 SV=1
trembl
ID B9HKI9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s01390g PE=4 SV=1
Gene Ontology
ID GO:0000287
description sucrose-phosphatase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01398: 39878-46556 , PASA_asmbl_01399: 39878-43833 , PASA_asmbl_01400: 39881-42761
cDNA
(Sanger)
(ID:Location)		 014_O21.ab1: 39878-43415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103688_010 0.0 - - PREDICTED: sucrose-phosphatase 2-like [Jatropha curcas]
2 Hb_000849_080 0.0804906103 - - PREDICTED: monocopper oxidase-like protein SKU5 isoform X1 [Jatropha curcas]
3 Hb_002808_020 0.0873406475 - - PREDICTED: uncharacterized protein LOC105630318 isoform X1 [Jatropha curcas]
4 Hb_135959_010 0.0956001105 - - hypothetical protein JCGZ_07060 [Jatropha curcas]
5 Hb_002007_260 0.0961774357 - - beta-mannosidase, putative [Ricinus communis]
6 Hb_001558_040 0.0996203298 - - PREDICTED: GPI ethanolamine phosphate transferase 2 [Jatropha curcas]
7 Hb_000157_070 0.1028090968 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
8 Hb_003633_090 0.1030046029 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
9 Hb_158845_060 0.105480042 - - PREDICTED: nudix hydrolase 3 isoform X1 [Jatropha curcas]
10 Hb_000985_050 0.1075488174 - - PREDICTED: uncharacterized protein LOC105647985 isoform X1 [Jatropha curcas]
11 Hb_002639_030 0.1095272859 - - PREDICTED: prolyl endopeptidase [Jatropha curcas]
12 Hb_062558_010 0.1102777251 - - PREDICTED: L-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X1 [Populus euphratica]
13 Hb_024758_020 0.1114003558 - - acyl-CoA binding protein 3B [Vernicia fordii]
14 Hb_001085_070 0.1126579714 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
15 Hb_005772_030 0.113219715 - - PREDICTED: protein trichome birefringence-like 35 [Jatropha curcas]
16 Hb_001307_240 0.1147442968 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase SUVR2 isoform X2 [Jatropha curcas]
17 Hb_080147_050 0.1147966234 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
18 Hb_000579_130 0.114990983 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001702_050 0.1155164517 - - PREDICTED: probable protein S-acyltransferase 19 isoform X1 [Jatropha curcas]
20 Hb_188063_050 0.1178524457 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_103688_010 Hb_103688_010 Hb_000849_080 Hb_000849_080 Hb_103688_010--Hb_000849_080 Hb_002808_020 Hb_002808_020 Hb_103688_010--Hb_002808_020 Hb_135959_010 Hb_135959_010 Hb_103688_010--Hb_135959_010 Hb_002007_260 Hb_002007_260 Hb_103688_010--Hb_002007_260 Hb_001558_040 Hb_001558_040 Hb_103688_010--Hb_001558_040 Hb_000157_070 Hb_000157_070 Hb_103688_010--Hb_000157_070 Hb_000140_450 Hb_000140_450 Hb_000849_080--Hb_000140_450 Hb_000849_080--Hb_002007_260 Hb_000849_080--Hb_002808_020 Hb_000575_100 Hb_000575_100 Hb_000849_080--Hb_000575_100 Hb_024570_040 Hb_024570_040 Hb_000849_080--Hb_024570_040 Hb_002639_030 Hb_002639_030 Hb_002808_020--Hb_002639_030 Hb_004837_280 Hb_004837_280 Hb_002808_020--Hb_004837_280 Hb_002301_030 Hb_002301_030 Hb_002808_020--Hb_002301_030 Hb_002687_200 Hb_002687_200 Hb_002808_020--Hb_002687_200 Hb_002851_010 Hb_002851_010 Hb_135959_010--Hb_002851_010 Hb_135959_010--Hb_000157_070 Hb_020805_180 Hb_020805_180 Hb_135959_010--Hb_020805_180 Hb_158845_060 Hb_158845_060 Hb_135959_010--Hb_158845_060 Hb_002027_190 Hb_002027_190 Hb_135959_010--Hb_002027_190 Hb_007747_170 Hb_007747_170 Hb_135959_010--Hb_007747_170 Hb_001246_130 Hb_001246_130 Hb_002007_260--Hb_001246_130 Hb_010042_030 Hb_010042_030 Hb_002007_260--Hb_010042_030 Hb_001085_290 Hb_001085_290 Hb_002007_260--Hb_001085_290 Hb_001159_030 Hb_001159_030 Hb_002007_260--Hb_001159_030 Hb_002007_260--Hb_001558_040 Hb_030982_010 Hb_030982_010 Hb_002007_260--Hb_030982_010 Hb_001307_240 Hb_001307_240 Hb_001558_040--Hb_001307_240 Hb_000579_130 Hb_000579_130 Hb_001558_040--Hb_000579_130 Hb_001085_080 Hb_001085_080 Hb_001558_040--Hb_001085_080 Hb_000020_160 Hb_000020_160 Hb_001558_040--Hb_000020_160 Hb_001558_040--Hb_158845_060 Hb_000157_070--Hb_020805_180 Hb_000157_070--Hb_002851_010 Hb_080147_050 Hb_080147_050 Hb_000157_070--Hb_080147_050 Hb_000342_050 Hb_000342_050 Hb_000157_070--Hb_000342_050 Hb_003626_050 Hb_003626_050 Hb_000157_070--Hb_003626_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.60143 3.99375 4.96146 5.80344 2.51013 4.06593
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57013 1.11363 0.594232 6.3816 4.85669

CAGE analysis