Hb_103739_010

Information

Type -
Description -
Location Contig103739: 2-910
Sequence    

Annotation

kegg
ID rcu:RCOM_0046150
description sodium/hydrogen exchanger, putative
nr
ID XP_002529026.1
description sodium/hydrogen exchanger, putative [Ricinus communis]
swissprot
ID Q84WG1
description Sodium/hydrogen exchanger 3 OS=Arabidopsis thaliana GN=NHX3 PE=2 SV=2
trembl
ID B9SSQ7
description Sodium/hydrogen exchanger OS=Ricinus communis GN=RCOM_0046150 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103739_010 0.0 - - sodium/hydrogen exchanger, putative [Ricinus communis]
2 Hb_001401_100 0.1829289807 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
3 Hb_001226_010 0.2171941176 transcription factor TF Family: RWP-RK conserved hypothetical protein [Ricinus communis]
4 Hb_001439_090 0.2243939679 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001437_160 0.2427725513 - - PREDICTED: high-affinity nitrate transporter 2.1-like [Jatropha curcas]
6 Hb_002890_080 0.2480152401 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000152_310 0.254529147 - - -
8 Hb_002890_070 0.2764838999 - - ATP-dependent RNA helicase family protein [Populus trichocarpa]
9 Hb_003891_090 0.2842072272 - - -
10 Hb_001322_030 0.2859690159 - - triacylglycerol lipase, putative [Ricinus communis]
11 Hb_000836_150 0.2938601527 - - hypothetical protein POPTR_0003s13070g [Populus trichocarpa]
12 Hb_008609_030 0.2961774514 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_015057_030 0.303164191 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52, partial [Jatropha curcas]
14 Hb_001623_070 0.3051376873 - - cytochrome B5 isoform 1, putative [Ricinus communis]
15 Hb_034904_010 0.3101923364 - - PREDICTED: uncharacterized protein LOC105775231 [Gossypium raimondii]
16 Hb_006746_010 0.3114650902 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_007145_010 0.3171494912 - - ammonium transporter 3.1-like protein [Camellia sinensis]
18 Hb_000740_020 0.3399715545 transcription factor TF Family: MYB-related asymmetric leaves1 and rough sheath, putative [Ricinus communis]
19 Hb_107429_010 0.3406160249 - - PREDICTED: calcium-dependent protein kinase 34 [Jatropha curcas]
20 Hb_011344_060 0.3445058211 - - PREDICTED: uncharacterized protein LOC105645975 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_103739_010 Hb_103739_010 Hb_001401_100 Hb_001401_100 Hb_103739_010--Hb_001401_100 Hb_001226_010 Hb_001226_010 Hb_103739_010--Hb_001226_010 Hb_001439_090 Hb_001439_090 Hb_103739_010--Hb_001439_090 Hb_001437_160 Hb_001437_160 Hb_103739_010--Hb_001437_160 Hb_002890_080 Hb_002890_080 Hb_103739_010--Hb_002890_080 Hb_000152_310 Hb_000152_310 Hb_103739_010--Hb_000152_310 Hb_001401_100--Hb_000152_310 Hb_003891_090 Hb_003891_090 Hb_001401_100--Hb_003891_090 Hb_001401_100--Hb_001439_090 Hb_001401_100--Hb_002890_080 Hb_011628_020 Hb_011628_020 Hb_001401_100--Hb_011628_020 Hb_001322_030 Hb_001322_030 Hb_001226_010--Hb_001322_030 Hb_034904_010 Hb_034904_010 Hb_001226_010--Hb_034904_010 Hb_001226_010--Hb_001437_160 Hb_000740_020 Hb_000740_020 Hb_001226_010--Hb_000740_020 Hb_007145_010 Hb_007145_010 Hb_001226_010--Hb_007145_010 Hb_001439_090--Hb_002890_080 Hb_001623_070 Hb_001623_070 Hb_001439_090--Hb_001623_070 Hb_006469_120 Hb_006469_120 Hb_001439_090--Hb_006469_120 Hb_024650_040 Hb_024650_040 Hb_001439_090--Hb_024650_040 Hb_002890_070 Hb_002890_070 Hb_001439_090--Hb_002890_070 Hb_001437_160--Hb_000740_020 Hb_107429_010 Hb_107429_010 Hb_001437_160--Hb_107429_010 Hb_000836_150 Hb_000836_150 Hb_001437_160--Hb_000836_150 Hb_011344_060 Hb_011344_060 Hb_001437_160--Hb_011344_060 Hb_002890_080--Hb_024650_040 Hb_015057_030 Hb_015057_030 Hb_002890_080--Hb_015057_030 Hb_002890_080--Hb_006469_120 Hb_002890_080--Hb_002890_070 Hb_051067_010 Hb_051067_010 Hb_002890_080--Hb_051067_010 Hb_000152_310--Hb_003891_090 Hb_012725_010 Hb_012725_010 Hb_000152_310--Hb_012725_010 Hb_049415_010 Hb_049415_010 Hb_000152_310--Hb_049415_010 Hb_000152_310--Hb_011628_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.118475 0.178862 0.333394 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.26113 0 0 0

CAGE analysis