Hb_103747_020

Information

Type -
Description -
Location Contig103747: 12648-20086
Sequence    

Annotation

kegg
ID rcu:RCOM_0942060
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID AFH35029.1
description calcium dependent protein kinase, partial [Hevea brasiliensis]
swissprot
ID Q06850
description Calcium-dependent protein kinase 1 OS=Arabidopsis thaliana GN=CPK1 PE=1 SV=1
trembl
ID K7P8C4
description Calcium dependent protein kinase (Fragment) OS=Hevea brasiliensis GN=CPK1 PE=2 SV=1
Gene Ontology
ID GO:0004683
description calcium-dependent protein kinase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01402: 12716-19985 , PASA_asmbl_01403: 14284-14831 , PASA_asmbl_01404: 17165-17319
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103747_020 0.0 - - calcium dependent protein kinase, partial [Hevea brasiliensis]
2 Hb_000317_510 0.0493504376 - - PREDICTED: long chain base biosynthesis protein 1 [Jatropha curcas]
3 Hb_002014_040 0.0516399335 - - site-1 protease, putative [Ricinus communis]
4 Hb_002686_040 0.0557019717 - - PREDICTED: T-complex protein 1 subunit theta [Jatropha curcas]
5 Hb_005723_020 0.0629308177 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000610_040 0.0640430087 - - PREDICTED: uncharacterized protein LOC105635307 isoform X1 [Jatropha curcas]
7 Hb_008226_090 0.0679361118 - - PREDICTED: reticulon-like protein B16 isoform X1 [Jatropha curcas]
8 Hb_020141_040 0.0694008216 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
9 Hb_000362_170 0.0703344209 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_000085_170 0.0718978021 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
11 Hb_002326_040 0.0737402132 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
12 Hb_000373_080 0.0738928227 - - PREDICTED: serine decarboxylase [Jatropha curcas]
13 Hb_027654_020 0.074164777 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
14 Hb_003186_020 0.0759893453 - - PREDICTED: histone deacetylase 15 isoform X1 [Jatropha curcas]
15 Hb_003436_020 0.076499474 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
16 Hb_008247_020 0.0768542411 - - PREDICTED: cyclin-L1-1-like [Jatropha curcas]
17 Hb_007894_160 0.0773006139 - - PREDICTED: purple acid phosphatase 18 [Jatropha curcas]
18 Hb_000702_090 0.0779120389 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
19 Hb_000214_050 0.079002806 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
20 Hb_012506_030 0.0791247279 - - AP-2 complex subunit alpha, putative [Ricinus communis]

Gene co-expression network

sample Hb_103747_020 Hb_103747_020 Hb_000317_510 Hb_000317_510 Hb_103747_020--Hb_000317_510 Hb_002014_040 Hb_002014_040 Hb_103747_020--Hb_002014_040 Hb_002686_040 Hb_002686_040 Hb_103747_020--Hb_002686_040 Hb_005723_020 Hb_005723_020 Hb_103747_020--Hb_005723_020 Hb_000610_040 Hb_000610_040 Hb_103747_020--Hb_000610_040 Hb_008226_090 Hb_008226_090 Hb_103747_020--Hb_008226_090 Hb_000373_080 Hb_000373_080 Hb_000317_510--Hb_000373_080 Hb_002326_110 Hb_002326_110 Hb_000317_510--Hb_002326_110 Hb_000362_170 Hb_000362_170 Hb_000317_510--Hb_000362_170 Hb_001005_030 Hb_001005_030 Hb_000317_510--Hb_001005_030 Hb_002054_050 Hb_002054_050 Hb_000317_510--Hb_002054_050 Hb_002014_040--Hb_000362_170 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_006618_090 Hb_006618_090 Hb_002686_040--Hb_006618_090 Hb_002686_040--Hb_005723_020 Hb_000174_060 Hb_000174_060 Hb_002686_040--Hb_000174_060 Hb_007894_160 Hb_007894_160 Hb_002686_040--Hb_007894_160 Hb_000398_080 Hb_000398_080 Hb_002686_040--Hb_000398_080 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_000321_140 Hb_000321_140 Hb_000610_040--Hb_000321_140 Hb_003436_020 Hb_003436_020 Hb_000610_040--Hb_003436_020 Hb_003186_020 Hb_003186_020 Hb_000610_040--Hb_003186_020 Hb_000610_040--Hb_007894_160 Hb_000702_090 Hb_000702_090 Hb_000610_040--Hb_000702_090 Hb_008568_020 Hb_008568_020 Hb_008226_090--Hb_008568_020 Hb_008226_090--Hb_001135_120 Hb_003912_040 Hb_003912_040 Hb_008226_090--Hb_003912_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8569 45.0214 59.2367 46.097 45.92 42.1246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.4048 20.0877 27.4515 38.5557 36.3455

CAGE analysis