Hb_103752_010

Information

Type -
Description -
Location Contig103752: 1538-2080
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07220g
description hypothetical protein
nr
ID XP_012086914.1
description PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
swissprot
ID Q9FLE8
description Uncharacterized protein At5g39865 OS=Arabidopsis thaliana GN=At5g39865 PE=2 SV=1
trembl
ID A0A067LJC7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01220 PE=4 SV=1
Gene Ontology
ID GO:0044699
description PREDICTED: uncharacterized protein At5g39865-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103752_010 0.0 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
2 Hb_005137_020 0.1062824565 - - PREDICTED: uncharacterized protein LOC101759641 [Setaria italica]
3 Hb_149683_010 0.1124153068 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
4 Hb_078633_010 0.1161166403 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_004297_040 0.1200239122 - - acyl CoA reductase [Hevea brasiliensis]
6 Hb_000684_160 0.1271682914 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
7 Hb_006816_440 0.1300724425 - - protein phosphatase 2c, putative [Ricinus communis]
8 Hb_000052_010 0.1307829508 - - hypothetical protein M569_08416, partial [Genlisea aurea]
9 Hb_001252_140 0.1325569393 - - catalytic, putative [Ricinus communis]
10 Hb_000454_110 0.1328248101 - - PREDICTED: polyprenol reductase 2-like isoform X3 [Populus euphratica]
11 Hb_001473_120 0.1360535705 - - Uncharacterized protein isoform 1 [Theobroma cacao]
12 Hb_000526_020 0.1361313899 - - thioredoxin-like family protein [Hevea brasiliensis]
13 Hb_000078_010 0.1366754884 - - hypothetical protein POPTR_0006s06510g, partial [Populus trichocarpa]
14 Hb_007810_030 0.1385427636 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
15 Hb_000184_180 0.1386665642 - - putative C3HC4-type RING zinc finger protein [Hevea brasiliensis]
16 Hb_001268_080 0.1401667304 - - catalytic, putative [Ricinus communis]
17 Hb_000544_110 0.1407951785 - - PREDICTED: probable calcium-binding protein CML27 [Jatropha curcas]
18 Hb_000367_280 0.1424855495 - - PREDICTED: flavin-containing monooxygenase FMO GS-OX-like 9 [Jatropha curcas]
19 Hb_007747_130 0.1444949824 - - PREDICTED: uncharacterized protein LOC105635879 [Jatropha curcas]
20 Hb_001723_080 0.1445438132 - - hypothetical protein L484_026139 [Morus notabilis]

Gene co-expression network

sample Hb_103752_010 Hb_103752_010 Hb_005137_020 Hb_005137_020 Hb_103752_010--Hb_005137_020 Hb_149683_010 Hb_149683_010 Hb_103752_010--Hb_149683_010 Hb_078633_010 Hb_078633_010 Hb_103752_010--Hb_078633_010 Hb_004297_040 Hb_004297_040 Hb_103752_010--Hb_004297_040 Hb_000684_160 Hb_000684_160 Hb_103752_010--Hb_000684_160 Hb_006816_440 Hb_006816_440 Hb_103752_010--Hb_006816_440 Hb_000544_110 Hb_000544_110 Hb_005137_020--Hb_000544_110 Hb_072912_020 Hb_072912_020 Hb_005137_020--Hb_072912_020 Hb_005137_020--Hb_078633_010 Hb_005908_040 Hb_005908_040 Hb_005137_020--Hb_005908_040 Hb_001102_250 Hb_001102_250 Hb_005137_020--Hb_001102_250 Hb_005137_020--Hb_004297_040 Hb_149683_010--Hb_006816_440 Hb_002235_230 Hb_002235_230 Hb_149683_010--Hb_002235_230 Hb_000184_180 Hb_000184_180 Hb_149683_010--Hb_000184_180 Hb_000052_010 Hb_000052_010 Hb_149683_010--Hb_000052_010 Hb_000300_400 Hb_000300_400 Hb_149683_010--Hb_000300_400 Hb_001268_080 Hb_001268_080 Hb_078633_010--Hb_001268_080 Hb_078633_010--Hb_072912_020 Hb_001213_120 Hb_001213_120 Hb_078633_010--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_078633_010--Hb_000367_280 Hb_078633_010--Hb_000544_110 Hb_004297_040--Hb_000367_280 Hb_004297_040--Hb_001213_120 Hb_004297_040--Hb_078633_010 Hb_004297_040--Hb_001102_250 Hb_004297_040--Hb_001268_080 Hb_012395_200 Hb_012395_200 Hb_000684_160--Hb_012395_200 Hb_003349_070 Hb_003349_070 Hb_000684_160--Hb_003349_070 Hb_007810_030 Hb_007810_030 Hb_000684_160--Hb_007810_030 Hb_001008_010 Hb_001008_010 Hb_000684_160--Hb_001008_010 Hb_011245_020 Hb_011245_020 Hb_000684_160--Hb_011245_020 Hb_006816_440--Hb_002235_230 Hb_006816_440--Hb_000184_180 Hb_000444_030 Hb_000444_030 Hb_006816_440--Hb_000444_030 Hb_001741_080 Hb_001741_080 Hb_006816_440--Hb_001741_080 Hb_006816_440--Hb_000052_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.6694 1.19303 1.70038 20.6482 24.9572 78.9836
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.249 221.835 112.575 7.36184 1.93267

CAGE analysis