Hb_103760_010

Information

Type -
Description -
Location Contig103760: 2-584
Sequence    

Annotation

kegg
ID rcu:RCOM_0460560
description serine/arginine rich splicing factor, putative
nr
ID XP_002531488.1
description serine/arginine rich splicing factor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SZR9
description Serine/arginine rich splicing factor, putative OS=Ricinus communis GN=RCOM_0460560 PE=4 SV=1
Gene Ontology
ID GO:0006396
description serine arginine-rich splicing factor sc35-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103760_010 0.0 - - serine/arginine rich splicing factor, putative [Ricinus communis]
2 Hb_000083_160 0.0790484198 - - Cell division cycle protein, putative [Ricinus communis]
3 Hb_001488_410 0.0876234194 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
4 Hb_007026_040 0.087640421 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
5 Hb_003010_020 0.0968930545 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_000208_210 0.097503434 - - PREDICTED: RNA-binding protein Nova-2 [Jatropha curcas]
7 Hb_001617_060 0.0993532038 - - PREDICTED: polyadenylate-binding protein RBP45B isoform X1 [Jatropha curcas]
8 Hb_004102_140 0.0996611969 - - conserved hypothetical protein [Ricinus communis]
9 Hb_019053_020 0.1001311934 - - hypothetical protein MIMGU_mgv1a0105441mg, partial [Erythranthe guttata]
10 Hb_003549_090 0.1006132464 - - PREDICTED: rhodanese-like domain-containing protein 6 [Jatropha curcas]
11 Hb_162603_010 0.1021682099 - - WD-repeat protein, putative [Ricinus communis]
12 Hb_005765_010 0.1034081035 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 isoform X1 [Jatropha curcas]
13 Hb_000521_120 0.1036330136 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000470_070 0.1054471829 - - PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP43-like [Jatropha curcas]
15 Hb_148079_010 0.1059044009 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
16 Hb_001188_060 0.1059775916 - - -
17 Hb_001025_080 0.1064847596 - - hypothetical protein JCGZ_11431 [Jatropha curcas]
18 Hb_004935_030 0.1066154823 - - PREDICTED: uncharacterized protein LOC102628125 [Citrus sinensis]
19 Hb_000208_260 0.1079005566 - - PREDICTED: acyl-CoA-binding domain-containing protein 4 [Jatropha curcas]
20 Hb_004096_100 0.1080454718 - - PREDICTED: NADPH-dependent diflavin oxidoreductase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_103760_010 Hb_103760_010 Hb_000083_160 Hb_000083_160 Hb_103760_010--Hb_000083_160 Hb_001488_410 Hb_001488_410 Hb_103760_010--Hb_001488_410 Hb_007026_040 Hb_007026_040 Hb_103760_010--Hb_007026_040 Hb_003010_020 Hb_003010_020 Hb_103760_010--Hb_003010_020 Hb_000208_210 Hb_000208_210 Hb_103760_010--Hb_000208_210 Hb_001617_060 Hb_001617_060 Hb_103760_010--Hb_001617_060 Hb_004935_030 Hb_004935_030 Hb_000083_160--Hb_004935_030 Hb_031284_040 Hb_031284_040 Hb_000083_160--Hb_031284_040 Hb_000271_090 Hb_000271_090 Hb_000083_160--Hb_000271_090 Hb_000083_160--Hb_001617_060 Hb_001635_090 Hb_001635_090 Hb_000083_160--Hb_001635_090 Hb_002235_170 Hb_002235_170 Hb_000083_160--Hb_002235_170 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_020719_030 Hb_020719_030 Hb_001488_410--Hb_020719_030 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_033834_060 Hb_033834_060 Hb_001488_410--Hb_033834_060 Hb_162603_010 Hb_162603_010 Hb_007026_040--Hb_162603_010 Hb_000236_310 Hb_000236_310 Hb_007026_040--Hb_000236_310 Hb_002600_140 Hb_002600_140 Hb_007026_040--Hb_002600_140 Hb_032050_040 Hb_032050_040 Hb_007026_040--Hb_032050_040 Hb_000718_080 Hb_000718_080 Hb_007026_040--Hb_000718_080 Hb_001416_070 Hb_001416_070 Hb_003010_020--Hb_001416_070 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070 Hb_000138_140 Hb_000138_140 Hb_000208_210--Hb_000138_140 Hb_019654_040 Hb_019654_040 Hb_000208_210--Hb_019654_040 Hb_003549_090 Hb_003549_090 Hb_000208_210--Hb_003549_090 Hb_000208_210--Hb_001488_410 Hb_004994_040 Hb_004994_040 Hb_000208_210--Hb_004994_040 Hb_001269_230 Hb_001269_230 Hb_000208_210--Hb_001269_230 Hb_000613_080 Hb_000613_080 Hb_001617_060--Hb_000613_080 Hb_000470_070 Hb_000470_070 Hb_001617_060--Hb_000470_070 Hb_003966_030 Hb_003966_030 Hb_001617_060--Hb_003966_030 Hb_003362_070 Hb_003362_070 Hb_001617_060--Hb_003362_070 Hb_001617_060--Hb_004102_140 Hb_001617_060--Hb_004935_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.6523 30.0194 41.5672 59.428 48.5394 107.307
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3721 35.6394 34.4101 61.4053 30.174

CAGE analysis