Hb_103788_010

Information

Type -
Description -
Location Contig103788: 2400-4094
Sequence    

Annotation

kegg
ID pop:POPTR_0013s02830g
description hypothetical protein
nr
ID XP_006375780.1
description hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FWB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s02830g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01407: 2993-3797
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_103788_010 0.0 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
2 Hb_003637_020 0.0988487624 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003752_120 0.1001978533 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
4 Hb_002915_070 0.1149895748 - - PREDICTED: protein TRANSPARENT TESTA GLABRA 1 [Jatropha curcas]
5 Hb_185513_010 0.1198002652 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006054_030 0.1204955938 - - PREDICTED: protein GPR107-like [Jatropha curcas]
7 Hb_000732_080 0.1267059968 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g45440 [Jatropha curcas]
8 Hb_012787_040 0.1288343958 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
9 Hb_000805_230 0.1319187866 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
10 Hb_000069_780 0.1352620646 - - atpob1, putative [Ricinus communis]
11 Hb_138585_100 0.1353517046 - - PREDICTED: uncharacterized protein LOC105648740 [Jatropha curcas]
12 Hb_000270_230 0.1419511905 - - PREDICTED: probable beta-1,3-galactosyltransferase 19 [Jatropha curcas]
13 Hb_000117_060 0.1428500803 - - PREDICTED: uncharacterized protein LOC103949199 [Pyrus x bretschneideri]
14 Hb_002053_130 0.142990729 - - UDP-glucose 4-epimerase, putative [Ricinus communis]
15 Hb_000179_230 0.1442933623 - - PREDICTED: myosin-17 [Jatropha curcas]
16 Hb_004032_310 0.1444252293 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]
17 Hb_001369_780 0.1444771285 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000186_200 0.1468572537 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
19 Hb_006711_070 0.1470416076 - - hypothetical protein RCOM_1336320 [Ricinus communis]
20 Hb_012107_010 0.1475679072 - - hypothetical protein JCGZ_19531 [Jatropha curcas]

Gene co-expression network

sample Hb_103788_010 Hb_103788_010 Hb_003637_020 Hb_003637_020 Hb_103788_010--Hb_003637_020 Hb_003752_120 Hb_003752_120 Hb_103788_010--Hb_003752_120 Hb_002915_070 Hb_002915_070 Hb_103788_010--Hb_002915_070 Hb_185513_010 Hb_185513_010 Hb_103788_010--Hb_185513_010 Hb_006054_030 Hb_006054_030 Hb_103788_010--Hb_006054_030 Hb_000732_080 Hb_000732_080 Hb_103788_010--Hb_000732_080 Hb_003637_020--Hb_185513_010 Hb_000117_060 Hb_000117_060 Hb_003637_020--Hb_000117_060 Hb_003637_020--Hb_003752_120 Hb_012725_040 Hb_012725_040 Hb_003637_020--Hb_012725_040 Hb_012258_020 Hb_012258_020 Hb_003637_020--Hb_012258_020 Hb_012787_040 Hb_012787_040 Hb_003752_120--Hb_012787_040 Hb_004032_310 Hb_004032_310 Hb_003752_120--Hb_004032_310 Hb_001662_170 Hb_001662_170 Hb_003752_120--Hb_001662_170 Hb_003752_120--Hb_002915_070 Hb_000069_780 Hb_000069_780 Hb_003752_120--Hb_000069_780 Hb_000805_230 Hb_000805_230 Hb_002915_070--Hb_000805_230 Hb_000448_060 Hb_000448_060 Hb_002915_070--Hb_000448_060 Hb_000179_230 Hb_000179_230 Hb_002915_070--Hb_000179_230 Hb_002915_070--Hb_004032_310 Hb_185513_010--Hb_012725_040 Hb_056012_010 Hb_056012_010 Hb_185513_010--Hb_056012_010 Hb_185513_010--Hb_000117_060 Hb_001865_060 Hb_001865_060 Hb_185513_010--Hb_001865_060 Hb_000941_080 Hb_000941_080 Hb_006054_030--Hb_000941_080 Hb_001369_780 Hb_001369_780 Hb_006054_030--Hb_001369_780 Hb_006054_030--Hb_000069_780 Hb_001410_130 Hb_001410_130 Hb_006054_030--Hb_001410_130 Hb_000270_230 Hb_000270_230 Hb_006054_030--Hb_000270_230 Hb_000460_060 Hb_000460_060 Hb_006054_030--Hb_000460_060 Hb_089100_040 Hb_089100_040 Hb_000732_080--Hb_089100_040 Hb_004162_120 Hb_004162_120 Hb_000732_080--Hb_004162_120 Hb_000732_080--Hb_006054_030 Hb_080451_010 Hb_080451_010 Hb_000732_080--Hb_080451_010 Hb_005096_010 Hb_005096_010 Hb_000732_080--Hb_005096_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.57363 88.8852 16.6922 42.132 10.3243 12.2471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.53562 7.89193 7.91833 16.4198 7.61881

CAGE analysis